Hb_002986_070

Information

Type -
Description -
Location Contig2986: 52405-54681
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11180g
description POPTRDRAFT_802856; hypothetical protein
nr
ID XP_012079216.1
description PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
swissprot
ID Q8GUM4
description Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=2
trembl
ID A0A067K6Q0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12377 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31182: 37979-53935 , PASA_asmbl_31183: 54090-54688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002986_070 0.0 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
2 Hb_002016_050 0.0988442534 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
3 Hb_007545_130 0.1026543886 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
4 Hb_015778_060 0.1053989999 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
5 Hb_005523_010 0.1174086504 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
6 Hb_000186_080 0.1190471212 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
7 Hb_013459_010 0.121328965 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
8 Hb_002973_110 0.1256867979 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_002986_060 0.1268196354 - - hypothetical protein M569_15879, partial [Genlisea aurea]
10 Hb_001341_010 0.1350957615 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
11 Hb_001050_050 0.1354868959 - - PREDICTED: pentatricopeptide repeat-containing protein At5g57250, mitochondrial [Jatropha curcas]
12 Hb_003506_050 0.1372453591 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_005250_030 0.1379364865 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
14 Hb_002942_130 0.1379826918 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
15 Hb_005754_030 0.1395587708 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
16 Hb_007192_090 0.140198499 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
17 Hb_001396_240 0.1404470224 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
18 Hb_000031_230 0.1404679419 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
19 Hb_001726_100 0.1408327711 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
20 Hb_010757_030 0.1412251636 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002986_070 Hb_002986_070 Hb_002016_050 Hb_002016_050 Hb_002986_070--Hb_002016_050 Hb_007545_130 Hb_007545_130 Hb_002986_070--Hb_007545_130 Hb_015778_060 Hb_015778_060 Hb_002986_070--Hb_015778_060 Hb_005523_010 Hb_005523_010 Hb_002986_070--Hb_005523_010 Hb_000186_080 Hb_000186_080 Hb_002986_070--Hb_000186_080 Hb_013459_010 Hb_013459_010 Hb_002986_070--Hb_013459_010 Hb_002016_050--Hb_000186_080 Hb_002016_050--Hb_015778_060 Hb_002016_050--Hb_007545_130 Hb_004785_070 Hb_004785_070 Hb_002016_050--Hb_004785_070 Hb_000997_140 Hb_000997_140 Hb_002016_050--Hb_000997_140 Hb_003506_050 Hb_003506_050 Hb_007545_130--Hb_003506_050 Hb_007545_130--Hb_013459_010 Hb_005250_030 Hb_005250_030 Hb_007545_130--Hb_005250_030 Hb_000925_090 Hb_000925_090 Hb_007545_130--Hb_000925_090 Hb_002600_060 Hb_002600_060 Hb_007545_130--Hb_002600_060 Hb_005211_020 Hb_005211_020 Hb_007545_130--Hb_005211_020 Hb_002973_110 Hb_002973_110 Hb_015778_060--Hb_002973_110 Hb_015778_060--Hb_000186_080 Hb_013399_090 Hb_013399_090 Hb_015778_060--Hb_013399_090 Hb_021079_020 Hb_021079_020 Hb_015778_060--Hb_021079_020 Hb_000320_360 Hb_000320_360 Hb_015778_060--Hb_000320_360 Hb_011616_020 Hb_011616_020 Hb_005523_010--Hb_011616_020 Hb_005523_010--Hb_005250_030 Hb_010757_030 Hb_010757_030 Hb_005523_010--Hb_010757_030 Hb_000529_140 Hb_000529_140 Hb_005523_010--Hb_000529_140 Hb_005523_010--Hb_013459_010 Hb_005701_130 Hb_005701_130 Hb_000186_080--Hb_005701_130 Hb_001408_120 Hb_001408_120 Hb_000186_080--Hb_001408_120 Hb_001341_010 Hb_001341_010 Hb_000186_080--Hb_001341_010 Hb_013749_050 Hb_013749_050 Hb_000186_080--Hb_013749_050 Hb_000186_080--Hb_002973_110 Hb_013459_010--Hb_005250_030 Hb_013459_010--Hb_000925_090 Hb_135572_010 Hb_135572_010 Hb_013459_010--Hb_135572_010 Hb_000714_040 Hb_000714_040 Hb_013459_010--Hb_000714_040 Hb_000815_170 Hb_000815_170 Hb_013459_010--Hb_000815_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.71166 5.01438 2.7714 2.26561 1.56824 3.79081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.662504 0.685765 1.33477 2.63146 9.71451

CAGE analysis