Hb_001408_120

Information

Type -
Description -
Location Contig1408: 99754-104571
Sequence    

Annotation

kegg
ID rcu:RCOM_0075460
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_002530253.1
description dead box ATP-dependent RNA helicase, putative [Ricinus communis]
swissprot
ID Q8H0U8
description DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana GN=RH42 PE=1 SV=2
trembl
ID B9SW84
description Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0075460 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 42

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11046: 100598-103706 , PASA_asmbl_11047: 100598-104567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001408_120 0.0 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
2 Hb_000186_080 0.0916902143 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
3 Hb_013399_090 0.0971563707 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
4 Hb_000008_410 0.1020347587 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
5 Hb_001341_010 0.1077993541 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
6 Hb_052946_010 0.1091132526 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
7 Hb_001726_100 0.1094176322 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
8 Hb_000320_360 0.111219442 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
9 Hb_000731_290 0.1118274203 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_000404_040 0.1154533287 - - conserved hypothetical protein [Ricinus communis]
11 Hb_015778_060 0.1194423242 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
12 Hb_000589_380 0.120460517 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
13 Hb_000154_130 0.121283049 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
14 Hb_007120_060 0.1236138782 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
15 Hb_000025_500 0.123905162 - - Ran GTPase binding protein, putative [Ricinus communis]
16 Hb_014006_010 0.124999874 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
17 Hb_013749_050 0.1269690014 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
18 Hb_000167_120 0.1277191542 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
19 Hb_065408_010 0.1277821614 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
20 Hb_005211_020 0.129029397 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001408_120 Hb_001408_120 Hb_000186_080 Hb_000186_080 Hb_001408_120--Hb_000186_080 Hb_013399_090 Hb_013399_090 Hb_001408_120--Hb_013399_090 Hb_000008_410 Hb_000008_410 Hb_001408_120--Hb_000008_410 Hb_001341_010 Hb_001341_010 Hb_001408_120--Hb_001341_010 Hb_052946_010 Hb_052946_010 Hb_001408_120--Hb_052946_010 Hb_001726_100 Hb_001726_100 Hb_001408_120--Hb_001726_100 Hb_005701_130 Hb_005701_130 Hb_000186_080--Hb_005701_130 Hb_000186_080--Hb_001341_010 Hb_002016_050 Hb_002016_050 Hb_000186_080--Hb_002016_050 Hb_013749_050 Hb_013749_050 Hb_000186_080--Hb_013749_050 Hb_002973_110 Hb_002973_110 Hb_000186_080--Hb_002973_110 Hb_014006_010 Hb_014006_010 Hb_013399_090--Hb_014006_010 Hb_000340_360 Hb_000340_360 Hb_013399_090--Hb_000340_360 Hb_000025_500 Hb_000025_500 Hb_013399_090--Hb_000025_500 Hb_000320_360 Hb_000320_360 Hb_013399_090--Hb_000320_360 Hb_004586_090 Hb_004586_090 Hb_013399_090--Hb_004586_090 Hb_007120_060 Hb_007120_060 Hb_000008_410--Hb_007120_060 Hb_000200_110 Hb_000200_110 Hb_000008_410--Hb_000200_110 Hb_012022_060 Hb_012022_060 Hb_000008_410--Hb_012022_060 Hb_004294_020 Hb_004294_020 Hb_000008_410--Hb_004294_020 Hb_001999_140 Hb_001999_140 Hb_000008_410--Hb_001999_140 Hb_005181_050 Hb_005181_050 Hb_001341_010--Hb_005181_050 Hb_000167_120 Hb_000167_120 Hb_001341_010--Hb_000167_120 Hb_001341_010--Hb_000025_500 Hb_001366_270 Hb_001366_270 Hb_001341_010--Hb_001366_270 Hb_003490_050 Hb_003490_050 Hb_001341_010--Hb_003490_050 Hb_000731_290 Hb_000731_290 Hb_052946_010--Hb_000731_290 Hb_001080_030 Hb_001080_030 Hb_052946_010--Hb_001080_030 Hb_052946_010--Hb_000025_500 Hb_004041_030 Hb_004041_030 Hb_052946_010--Hb_004041_030 Hb_008511_140 Hb_008511_140 Hb_052946_010--Hb_008511_140 Hb_003029_140 Hb_003029_140 Hb_052946_010--Hb_003029_140 Hb_001726_100--Hb_007120_060 Hb_001726_050 Hb_001726_050 Hb_001726_100--Hb_001726_050 Hb_000925_090 Hb_000925_090 Hb_001726_100--Hb_000925_090 Hb_000363_300 Hb_000363_300 Hb_001726_100--Hb_000363_300 Hb_000656_060 Hb_000656_060 Hb_001726_100--Hb_000656_060 Hb_012244_020 Hb_012244_020 Hb_001726_100--Hb_012244_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.29118 28.4637 13.9538 13.8872 13.6731 8.32608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.43113 5.1231 9.24295 26.7924 53.4467

CAGE analysis