Hb_000008_410

Information

Type rubber biosynthesis
Description Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Location Contig8: 484483-491187
Sequence    

Annotation

kegg
ID tcc:TCM_042044
description 4-hydroxy-3-methylbut-2-enyl diphosphate synthase isoform 1
nr
ID BAF98296.1
description 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
swissprot
ID F4K0E8
description 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic OS=Arabidopsis thaliana GN=ISPG PE=1 SV=1
trembl
ID A9ZN14
description 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Hevea brasiliensis GN=HbHDS PE=2 SV=1
Gene Ontology
ID GO:0005506
description 4-hydroxy-3-methylbut-2-en-1-yl diphosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58704: 484458-491243
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_410 0.0 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
2 Hb_007120_060 0.0963098556 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
3 Hb_000200_110 0.101746421 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
4 Hb_001408_120 0.1020347587 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
5 Hb_012022_060 0.10360678 - - PREDICTED: uncharacterized protein LOC105646588 isoform X2 [Jatropha curcas]
6 Hb_004294_020 0.1039379518 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
7 Hb_001999_140 0.104242768 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_000664_120 0.1047767902 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
9 Hb_004586_090 0.1069764526 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
10 Hb_006478_030 0.1081714476 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
11 Hb_000243_400 0.1094960766 - - PREDICTED: nucleolin-like [Jatropha curcas]
12 Hb_001477_020 0.1099377267 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
13 Hb_065408_010 0.1111622065 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
14 Hb_160608_010 0.1118772181 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
15 Hb_000320_360 0.112675489 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
16 Hb_000003_410 0.1133791026 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
17 Hb_001953_120 0.1135743636 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
18 Hb_143629_020 0.1158072809 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
19 Hb_000826_070 0.1162337888 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001726_100 0.1165971758 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000008_410 Hb_000008_410 Hb_007120_060 Hb_007120_060 Hb_000008_410--Hb_007120_060 Hb_000200_110 Hb_000200_110 Hb_000008_410--Hb_000200_110 Hb_001408_120 Hb_001408_120 Hb_000008_410--Hb_001408_120 Hb_012022_060 Hb_012022_060 Hb_000008_410--Hb_012022_060 Hb_004294_020 Hb_004294_020 Hb_000008_410--Hb_004294_020 Hb_001999_140 Hb_001999_140 Hb_000008_410--Hb_001999_140 Hb_065408_010 Hb_065408_010 Hb_007120_060--Hb_065408_010 Hb_001726_100 Hb_001726_100 Hb_007120_060--Hb_001726_100 Hb_000925_090 Hb_000925_090 Hb_007120_060--Hb_000925_090 Hb_001133_030 Hb_001133_030 Hb_007120_060--Hb_001133_030 Hb_001085_030 Hb_001085_030 Hb_007120_060--Hb_001085_030 Hb_000003_410 Hb_000003_410 Hb_007120_060--Hb_000003_410 Hb_001477_020 Hb_001477_020 Hb_000200_110--Hb_001477_020 Hb_000220_120 Hb_000220_120 Hb_000200_110--Hb_000220_120 Hb_000428_030 Hb_000428_030 Hb_000200_110--Hb_000428_030 Hb_000243_400 Hb_000243_400 Hb_000200_110--Hb_000243_400 Hb_000331_100 Hb_000331_100 Hb_000200_110--Hb_000331_100 Hb_143629_020 Hb_143629_020 Hb_000200_110--Hb_143629_020 Hb_000186_080 Hb_000186_080 Hb_001408_120--Hb_000186_080 Hb_013399_090 Hb_013399_090 Hb_001408_120--Hb_013399_090 Hb_001341_010 Hb_001341_010 Hb_001408_120--Hb_001341_010 Hb_052946_010 Hb_052946_010 Hb_001408_120--Hb_052946_010 Hb_001408_120--Hb_001726_100 Hb_000363_300 Hb_000363_300 Hb_012022_060--Hb_000363_300 Hb_000934_210 Hb_000934_210 Hb_012022_060--Hb_000934_210 Hb_013459_020 Hb_013459_020 Hb_012022_060--Hb_013459_020 Hb_002357_070 Hb_002357_070 Hb_012022_060--Hb_002357_070 Hb_000009_030 Hb_000009_030 Hb_012022_060--Hb_000009_030 Hb_000664_120 Hb_000664_120 Hb_012022_060--Hb_000664_120 Hb_000826_070 Hb_000826_070 Hb_004294_020--Hb_000826_070 Hb_004294_020--Hb_143629_020 Hb_004294_020--Hb_001999_140 Hb_002809_160 Hb_002809_160 Hb_004294_020--Hb_002809_160 Hb_000109_260 Hb_000109_260 Hb_004294_020--Hb_000109_260 Hb_160608_010 Hb_160608_010 Hb_004294_020--Hb_160608_010 Hb_001999_140--Hb_000826_070 Hb_001999_140--Hb_000664_120 Hb_001999_140--Hb_013459_020 Hb_001221_180 Hb_001221_180 Hb_001999_140--Hb_001221_180 Hb_003093_040 Hb_003093_040 Hb_001999_140--Hb_003093_040 Hb_001999_140--Hb_002357_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5303 45.0268 28.5183 18.7129 21.9314 14.3378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7475 4.71692 12.437 46.3675 58.2253

CAGE analysis