Hb_002016_050

Information

Type -
Description -
Location Contig2016: 47091-50942
Sequence    

Annotation

kegg
ID cit:102619896
description translocase of chloroplast 159, chloroplastic-like
nr
ID XP_012082732.1
description PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
swissprot
ID O81283
description Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1
trembl
ID A0A067K8L0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13910 PE=4 SV=1
Gene Ontology
ID GO:0005829
description translocase of chloroplast chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 012_D05.ab1: 47379-48079

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002016_050 0.0 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
2 Hb_000186_080 0.094516578 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
3 Hb_002986_070 0.0988442534 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
4 Hb_015778_060 0.120375262 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
5 Hb_007545_130 0.1318761653 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
6 Hb_004785_070 0.1321761709 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
7 Hb_000997_140 0.1335794957 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
8 Hb_000320_360 0.1350804141 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
9 Hb_004162_190 0.1352821086 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
10 Hb_007192_090 0.1355637495 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
11 Hb_001832_040 0.1380595773 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001408_120 0.1387068806 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
13 Hb_002942_130 0.1430383982 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
14 Hb_010757_030 0.1430503489 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_002973_110 0.1434483096 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_001726_100 0.1436537007 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
17 Hb_002249_030 0.1449514824 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
18 Hb_000154_130 0.1455382656 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
19 Hb_005523_010 0.1477947969 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
20 Hb_005701_130 0.1483693945 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]

Gene co-expression network

sample Hb_002016_050 Hb_002016_050 Hb_000186_080 Hb_000186_080 Hb_002016_050--Hb_000186_080 Hb_002986_070 Hb_002986_070 Hb_002016_050--Hb_002986_070 Hb_015778_060 Hb_015778_060 Hb_002016_050--Hb_015778_060 Hb_007545_130 Hb_007545_130 Hb_002016_050--Hb_007545_130 Hb_004785_070 Hb_004785_070 Hb_002016_050--Hb_004785_070 Hb_000997_140 Hb_000997_140 Hb_002016_050--Hb_000997_140 Hb_005701_130 Hb_005701_130 Hb_000186_080--Hb_005701_130 Hb_001408_120 Hb_001408_120 Hb_000186_080--Hb_001408_120 Hb_001341_010 Hb_001341_010 Hb_000186_080--Hb_001341_010 Hb_013749_050 Hb_013749_050 Hb_000186_080--Hb_013749_050 Hb_002973_110 Hb_002973_110 Hb_000186_080--Hb_002973_110 Hb_002986_070--Hb_007545_130 Hb_002986_070--Hb_015778_060 Hb_005523_010 Hb_005523_010 Hb_002986_070--Hb_005523_010 Hb_002986_070--Hb_000186_080 Hb_013459_010 Hb_013459_010 Hb_002986_070--Hb_013459_010 Hb_015778_060--Hb_002973_110 Hb_015778_060--Hb_000186_080 Hb_013399_090 Hb_013399_090 Hb_015778_060--Hb_013399_090 Hb_021079_020 Hb_021079_020 Hb_015778_060--Hb_021079_020 Hb_000320_360 Hb_000320_360 Hb_015778_060--Hb_000320_360 Hb_003506_050 Hb_003506_050 Hb_007545_130--Hb_003506_050 Hb_007545_130--Hb_013459_010 Hb_005250_030 Hb_005250_030 Hb_007545_130--Hb_005250_030 Hb_000925_090 Hb_000925_090 Hb_007545_130--Hb_000925_090 Hb_002600_060 Hb_002600_060 Hb_007545_130--Hb_002600_060 Hb_005211_020 Hb_005211_020 Hb_007545_130--Hb_005211_020 Hb_003077_130 Hb_003077_130 Hb_004785_070--Hb_003077_130 Hb_024714_080 Hb_024714_080 Hb_004785_070--Hb_024714_080 Hb_000069_490 Hb_000069_490 Hb_004785_070--Hb_000069_490 Hb_002276_070 Hb_002276_070 Hb_004785_070--Hb_002276_070 Hb_001437_120 Hb_001437_120 Hb_004785_070--Hb_001437_120 Hb_010757_030 Hb_010757_030 Hb_004785_070--Hb_010757_030 Hb_028707_110 Hb_028707_110 Hb_000997_140--Hb_028707_110 Hb_000997_140--Hb_003077_130 Hb_003029_140 Hb_003029_140 Hb_000997_140--Hb_003029_140 Hb_003929_220 Hb_003929_220 Hb_000997_140--Hb_003929_220 Hb_018043_020 Hb_018043_020 Hb_000997_140--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_000997_140--Hb_001250_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.7914 64.2368 27.6573 24.2325 15.2742 25.0662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.107 7.1665 14.9705 27.9506 119.269

CAGE analysis