Hb_003929_220

Information

Type -
Description -
Location Contig3929: 133271-135425
Sequence    

Annotation

kegg
ID rcu:RCOM_1003450
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002519315.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9SQU6
description Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2 SV=1
trembl
ID B9RZZ6
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1003450 PE=4 SV=1
Gene Ontology
ID GO:0019843
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39368: 123909-133081 , PASA_asmbl_39371: 133356-135335
cDNA
(Sanger)
(ID:Location)		 047_M11.ab1: 134121-134839

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_220 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000997_140 0.0980183848 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
3 Hb_000771_170 0.103741703 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_028707_110 0.106448357 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
5 Hb_001408_030 0.1085108661 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
6 Hb_001472_160 0.1094217954 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
7 Hb_001437_120 0.1100721525 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
8 Hb_004629_030 0.111423314 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_018043_020 0.1120687904 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
10 Hb_007192_090 0.1140959371 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
11 Hb_002928_030 0.1141445922 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
12 Hb_001828_120 0.1148146891 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
13 Hb_001250_020 0.1176797811 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
14 Hb_000260_710 0.1195858787 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
15 Hb_008092_050 0.1208455231 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
16 Hb_003029_140 0.1225406753 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
17 Hb_007576_180 0.1228169115 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
18 Hb_004837_020 0.1270354775 - - PREDICTED: uncharacterized protein LOC105648271 [Jatropha curcas]
19 Hb_003734_080 0.1273201599 - - myosin vIII, putative [Ricinus communis]
20 Hb_005288_180 0.1279763483 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003929_220 Hb_003929_220 Hb_000997_140 Hb_000997_140 Hb_003929_220--Hb_000997_140 Hb_000771_170 Hb_000771_170 Hb_003929_220--Hb_000771_170 Hb_028707_110 Hb_028707_110 Hb_003929_220--Hb_028707_110 Hb_001408_030 Hb_001408_030 Hb_003929_220--Hb_001408_030 Hb_001472_160 Hb_001472_160 Hb_003929_220--Hb_001472_160 Hb_001437_120 Hb_001437_120 Hb_003929_220--Hb_001437_120 Hb_000997_140--Hb_028707_110 Hb_003077_130 Hb_003077_130 Hb_000997_140--Hb_003077_130 Hb_003029_140 Hb_003029_140 Hb_000997_140--Hb_003029_140 Hb_018043_020 Hb_018043_020 Hb_000997_140--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_000997_140--Hb_001250_020 Hb_002600_070 Hb_002600_070 Hb_000771_170--Hb_002600_070 Hb_004225_040 Hb_004225_040 Hb_000771_170--Hb_004225_040 Hb_000562_070 Hb_000562_070 Hb_000771_170--Hb_000562_070 Hb_000771_170--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_000771_170--Hb_004884_180 Hb_000482_050 Hb_000482_050 Hb_000771_170--Hb_000482_050 Hb_028707_110--Hb_001437_120 Hb_000069_490 Hb_000069_490 Hb_028707_110--Hb_000069_490 Hb_010757_030 Hb_010757_030 Hb_028707_110--Hb_010757_030 Hb_028707_110--Hb_003077_130 Hb_008092_050 Hb_008092_050 Hb_001408_030--Hb_008092_050 Hb_008092_060 Hb_008092_060 Hb_001408_030--Hb_008092_060 Hb_001408_030--Hb_001437_120 Hb_004254_100 Hb_004254_100 Hb_001408_030--Hb_004254_100 Hb_001396_240 Hb_001396_240 Hb_001408_030--Hb_001396_240 Hb_025477_050 Hb_025477_050 Hb_001472_160--Hb_025477_050 Hb_001472_160--Hb_004884_180 Hb_000220_210 Hb_000220_210 Hb_001472_160--Hb_000220_210 Hb_001472_160--Hb_004225_040 Hb_000309_020 Hb_000309_020 Hb_001472_160--Hb_000309_020 Hb_002973_110 Hb_002973_110 Hb_001472_160--Hb_002973_110 Hb_002276_070 Hb_002276_070 Hb_001437_120--Hb_002276_070 Hb_001437_120--Hb_008092_060 Hb_001437_120--Hb_000997_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.41562 15.3224 24.8264 7.97116 9.30786 7.88829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4396 3.69421 5.56043 8.68291 43.6056

CAGE analysis