Hb_015778_060

Information

Type -
Description -
Location Contig15778: 79751-98027
Sequence    

Annotation

kegg
ID rcu:RCOM_1197660
description zinc finger protein, putative
nr
ID XP_012093030.1
description PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
swissprot
ID O14099
description Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=3 SV=1
trembl
ID B9T628
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1197660 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13797: 79495-84801 , PASA_asmbl_13799: 86837-87536 , PASA_asmbl_13800: 88190-88777 , PASA_asmbl_13801: 88362-96716
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015778_060 0.0 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
2 Hb_002973_110 0.0994187359 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_000186_080 0.1021370433 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
4 Hb_002986_070 0.1053989999 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
5 Hb_013399_090 0.1082712952 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
6 Hb_021079_020 0.1093888764 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
7 Hb_000320_360 0.1112166823 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
8 Hb_013749_050 0.1131202529 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
9 Hb_000997_140 0.1155710681 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
10 Hb_018043_020 0.1193580857 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
11 Hb_001408_120 0.1194423242 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_007192_090 0.1194686351 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
13 Hb_001221_300 0.1198442167 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
14 Hb_002249_030 0.1198663741 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
15 Hb_000025_500 0.1200551928 - - Ran GTPase binding protein, putative [Ricinus communis]
16 Hb_002016_050 0.120375262 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
17 Hb_001832_040 0.1212244467 - - conserved hypothetical protein [Ricinus communis]
18 Hb_014006_010 0.1262705326 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
19 Hb_002078_470 0.1263877524 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
20 Hb_159809_090 0.1273632107 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]

Gene co-expression network

sample Hb_015778_060 Hb_015778_060 Hb_002973_110 Hb_002973_110 Hb_015778_060--Hb_002973_110 Hb_000186_080 Hb_000186_080 Hb_015778_060--Hb_000186_080 Hb_002986_070 Hb_002986_070 Hb_015778_060--Hb_002986_070 Hb_013399_090 Hb_013399_090 Hb_015778_060--Hb_013399_090 Hb_021079_020 Hb_021079_020 Hb_015778_060--Hb_021079_020 Hb_000320_360 Hb_000320_360 Hb_015778_060--Hb_000320_360 Hb_013459_020 Hb_013459_020 Hb_002973_110--Hb_013459_020 Hb_005211_020 Hb_005211_020 Hb_002973_110--Hb_005211_020 Hb_013749_050 Hb_013749_050 Hb_002973_110--Hb_013749_050 Hb_007012_030 Hb_007012_030 Hb_002973_110--Hb_007012_030 Hb_001472_160 Hb_001472_160 Hb_002973_110--Hb_001472_160 Hb_002600_070 Hb_002600_070 Hb_002973_110--Hb_002600_070 Hb_005701_130 Hb_005701_130 Hb_000186_080--Hb_005701_130 Hb_001408_120 Hb_001408_120 Hb_000186_080--Hb_001408_120 Hb_001341_010 Hb_001341_010 Hb_000186_080--Hb_001341_010 Hb_002016_050 Hb_002016_050 Hb_000186_080--Hb_002016_050 Hb_000186_080--Hb_013749_050 Hb_000186_080--Hb_002973_110 Hb_002986_070--Hb_002016_050 Hb_007545_130 Hb_007545_130 Hb_002986_070--Hb_007545_130 Hb_005523_010 Hb_005523_010 Hb_002986_070--Hb_005523_010 Hb_002986_070--Hb_000186_080 Hb_013459_010 Hb_013459_010 Hb_002986_070--Hb_013459_010 Hb_014006_010 Hb_014006_010 Hb_013399_090--Hb_014006_010 Hb_000340_360 Hb_000340_360 Hb_013399_090--Hb_000340_360 Hb_000025_500 Hb_000025_500 Hb_013399_090--Hb_000025_500 Hb_013399_090--Hb_000320_360 Hb_013399_090--Hb_001408_120 Hb_004586_090 Hb_004586_090 Hb_013399_090--Hb_004586_090 Hb_000376_210 Hb_000376_210 Hb_021079_020--Hb_000376_210 Hb_001221_300 Hb_001221_300 Hb_021079_020--Hb_001221_300 Hb_021079_020--Hb_013399_090 Hb_021079_020--Hb_000340_360 Hb_000170_160 Hb_000170_160 Hb_021079_020--Hb_000170_160 Hb_000359_220 Hb_000359_220 Hb_000320_360--Hb_000359_220 Hb_000320_360--Hb_001408_120 Hb_002942_130 Hb_002942_130 Hb_000320_360--Hb_002942_130 Hb_000008_410 Hb_000008_410 Hb_000320_360--Hb_000008_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.366185 2.15997 1.4667 0.907556 0.729878 0.953689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.415649 0.516477 0.545503 1.13878 3.94703

CAGE analysis