Hb_000906_070

Information

Type -
Description -
Location Contig906: 106934-115389
Sequence    

Annotation

kegg
ID rcu:RCOM_0850090
description Protein SCAR2, putative
nr
ID XP_012089741.1
description PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
swissprot
ID Q5XPJ9
description Protein SCAR2 OS=Arabidopsis thaliana GN=SCAR2 PE=1 SV=1
trembl
ID A0A067JTE7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00396 PE=4 SV=1
Gene Ontology
ID GO:0044464
description protein scar2-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62035: 108577-115500 , PASA_asmbl_62036: 108577-115500 , PASA_asmbl_62037: 107260-108840 , PASA_asmbl_62038: 112544-112899
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000906_070 0.0 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
2 Hb_004346_040 0.0947410544 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
3 Hb_001109_160 0.0976027131 - - DNA binding protein, putative [Ricinus communis]
4 Hb_006916_030 0.1070887513 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
5 Hb_000359_220 0.116032722 - - PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Jatropha curcas]
6 Hb_029552_020 0.1208088398 - - conserved hypothetical protein [Ricinus communis]
7 Hb_013399_090 0.122110955 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
8 Hb_007576_180 0.1226064641 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
9 Hb_001250_020 0.1237769342 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
10 Hb_000992_020 0.1242520997 - - monoxygenase, putative [Ricinus communis]
11 Hb_002447_050 0.1243186783 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000803_220 0.1263911862 - - PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Jatropha curcas]
13 Hb_000042_050 0.1274743841 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
14 Hb_001821_060 0.1280743103 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
15 Hb_025045_010 0.1303279566 - - catalytic, putative [Ricinus communis]
16 Hb_001425_010 0.1313895225 - - sugar transporter, putative [Ricinus communis]
17 Hb_000066_040 0.1324833973 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
18 Hb_018043_020 0.1339122914 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
19 Hb_008616_040 0.1344705997 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
20 Hb_010984_010 0.1347465547 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000906_070 Hb_000906_070 Hb_004346_040 Hb_004346_040 Hb_000906_070--Hb_004346_040 Hb_001109_160 Hb_001109_160 Hb_000906_070--Hb_001109_160 Hb_006916_030 Hb_006916_030 Hb_000906_070--Hb_006916_030 Hb_000359_220 Hb_000359_220 Hb_000906_070--Hb_000359_220 Hb_029552_020 Hb_029552_020 Hb_000906_070--Hb_029552_020 Hb_013399_090 Hb_013399_090 Hb_000906_070--Hb_013399_090 Hb_000093_140 Hb_000093_140 Hb_004346_040--Hb_000093_140 Hb_005015_020 Hb_005015_020 Hb_004346_040--Hb_005015_020 Hb_013968_010 Hb_013968_010 Hb_004346_040--Hb_013968_010 Hb_004324_120 Hb_004324_120 Hb_004346_040--Hb_004324_120 Hb_002447_050 Hb_002447_050 Hb_004346_040--Hb_002447_050 Hb_001109_160--Hb_006916_030 Hb_008616_040 Hb_008616_040 Hb_001109_160--Hb_008616_040 Hb_001250_020 Hb_001250_020 Hb_001109_160--Hb_001250_020 Hb_000066_040 Hb_000066_040 Hb_001109_160--Hb_000066_040 Hb_003029_140 Hb_003029_140 Hb_001109_160--Hb_003029_140 Hb_000964_170 Hb_000964_170 Hb_006916_030--Hb_000964_170 Hb_001140_180 Hb_001140_180 Hb_006916_030--Hb_001140_180 Hb_000445_370 Hb_000445_370 Hb_006916_030--Hb_000445_370 Hb_006916_030--Hb_008616_040 Hb_006916_030--Hb_029552_020 Hb_000320_360 Hb_000320_360 Hb_000359_220--Hb_000320_360 Hb_001411_050 Hb_001411_050 Hb_000359_220--Hb_001411_050 Hb_000359_220--Hb_013399_090 Hb_006846_080 Hb_006846_080 Hb_000359_220--Hb_006846_080 Hb_001411_030 Hb_001411_030 Hb_000359_220--Hb_001411_030 Hb_029552_020--Hb_001140_180 Hb_001279_020 Hb_001279_020 Hb_029552_020--Hb_001279_020 Hb_005305_130 Hb_005305_130 Hb_029552_020--Hb_005305_130 Hb_000529_130 Hb_000529_130 Hb_029552_020--Hb_000529_130 Hb_002809_160 Hb_002809_160 Hb_029552_020--Hb_002809_160 Hb_000562_070 Hb_000562_070 Hb_029552_020--Hb_000562_070 Hb_014006_010 Hb_014006_010 Hb_013399_090--Hb_014006_010 Hb_000340_360 Hb_000340_360 Hb_013399_090--Hb_000340_360 Hb_000025_500 Hb_000025_500 Hb_013399_090--Hb_000025_500 Hb_013399_090--Hb_000320_360 Hb_001408_120 Hb_001408_120 Hb_013399_090--Hb_001408_120 Hb_004586_090 Hb_004586_090 Hb_013399_090--Hb_004586_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.4399 15.0515 19.5823 12.2164 5.96765 5.63399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02179 1.04727 2.04181 10.3388 33.6069

CAGE analysis