Hb_000964_170

Information

Type -
Description -
Location Contig964: 149082-157058
Sequence    

Annotation

kegg
ID rcu:RCOM_0493240
description Cellulose synthase A catalytic subunit 6 [UDP-forming], putative (EC:2.4.1.12)
nr
ID XP_002532166.1
description Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
swissprot
ID Q941L0
description Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2
trembl
ID B9T1P7
description Cellulose synthase OS=Ricinus communis GN=RCOM_0493240 PE=3 SV=1
Gene Ontology
ID GO:0005768
description cellulose synthase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63861: 149130-156787 , PASA_asmbl_63862: 149167-156074 , PASA_asmbl_63864: 156491-156715
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000964_170 0.0 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
2 Hb_002320_090 0.0743867542 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
3 Hb_006916_030 0.0926268715 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
4 Hb_000445_370 0.1228349202 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
5 Hb_001411_050 0.1228893853 - - PREDICTED: uncharacterized protein LOC105640956 [Jatropha curcas]
6 Hb_001140_180 0.1255194363 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
7 Hb_000270_710 0.1300326516 - - PREDICTED: WAT1-related protein At5g40240-like isoform X1 [Jatropha curcas]
8 Hb_000997_070 0.1302782714 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
9 Hb_000562_100 0.1315146224 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
10 Hb_000167_040 0.1337327669 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
11 Hb_000959_300 0.1366293971 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
12 Hb_000906_070 0.1371123637 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
13 Hb_000251_050 0.1378080382 - - hypothetical protein JCGZ_21678 [Jatropha curcas]
14 Hb_000359_220 0.1379861266 - - PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Jatropha curcas]
15 Hb_000281_070 0.1389278276 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
16 Hb_001109_160 0.1395138523 - - DNA binding protein, putative [Ricinus communis]
17 Hb_029552_020 0.1398795318 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003849_160 0.1398828931 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
19 Hb_006846_080 0.1402596625 - - calnexin, putative [Ricinus communis]
20 Hb_001411_030 0.1447098846 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]

Gene co-expression network

sample Hb_000964_170 Hb_000964_170 Hb_002320_090 Hb_002320_090 Hb_000964_170--Hb_002320_090 Hb_006916_030 Hb_006916_030 Hb_000964_170--Hb_006916_030 Hb_000445_370 Hb_000445_370 Hb_000964_170--Hb_000445_370 Hb_001411_050 Hb_001411_050 Hb_000964_170--Hb_001411_050 Hb_001140_180 Hb_001140_180 Hb_000964_170--Hb_001140_180 Hb_000270_710 Hb_000270_710 Hb_000964_170--Hb_000270_710 Hb_002320_090--Hb_006916_030 Hb_002320_090--Hb_000270_710 Hb_001266_120 Hb_001266_120 Hb_002320_090--Hb_001266_120 Hb_003632_030 Hb_003632_030 Hb_002320_090--Hb_003632_030 Hb_002320_090--Hb_001411_050 Hb_001109_160 Hb_001109_160 Hb_006916_030--Hb_001109_160 Hb_006916_030--Hb_001140_180 Hb_006916_030--Hb_000445_370 Hb_008616_040 Hb_008616_040 Hb_006916_030--Hb_008616_040 Hb_029552_020 Hb_029552_020 Hb_006916_030--Hb_029552_020 Hb_003582_090 Hb_003582_090 Hb_000445_370--Hb_003582_090 Hb_035834_010 Hb_035834_010 Hb_000445_370--Hb_035834_010 Hb_000066_040 Hb_000066_040 Hb_000445_370--Hb_000066_040 Hb_000167_040 Hb_000167_040 Hb_000445_370--Hb_000167_040 Hb_009193_010 Hb_009193_010 Hb_000445_370--Hb_009193_010 Hb_001579_200 Hb_001579_200 Hb_001411_050--Hb_001579_200 Hb_000359_220 Hb_000359_220 Hb_001411_050--Hb_000359_220 Hb_001411_050--Hb_006916_030 Hb_006846_080 Hb_006846_080 Hb_001411_050--Hb_006846_080 Hb_004225_040 Hb_004225_040 Hb_001411_050--Hb_004225_040 Hb_001411_050--Hb_001140_180 Hb_001140_180--Hb_029552_020 Hb_002828_060 Hb_002828_060 Hb_001140_180--Hb_002828_060 Hb_001279_020 Hb_001279_020 Hb_001140_180--Hb_001279_020 Hb_000562_070 Hb_000562_070 Hb_001140_180--Hb_000562_070 Hb_001053_080 Hb_001053_080 Hb_001140_180--Hb_001053_080 Hb_001411_130 Hb_001411_130 Hb_001140_180--Hb_001411_130 Hb_000696_190 Hb_000696_190 Hb_000270_710--Hb_000696_190 Hb_000270_710--Hb_006916_030 Hb_000270_830 Hb_000270_830 Hb_000270_710--Hb_000270_830 Hb_000270_710--Hb_035834_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.0063 44.07 51.4058 81.8542 36.9635 26.4207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.94053 2.97084 6.69169 34.6633 114.927

CAGE analysis