Hb_000066_040

Information

Type -
Description -
Location Contig66: 57153-63367
Sequence    

Annotation

kegg
ID pop:POPTR_0016s03470g
description POPTRDRAFT_734755; CDPK-related kinase 1 family protein
nr
ID XP_011000411.1
description PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
swissprot
ID O80673
description CDPK-related kinase 1 OS=Arabidopsis thaliana GN=CRK1 PE=1 SV=1
trembl
ID B9IHQ0
description CDPK-related kinase 1 family protein OS=Populus trichocarpa GN=POPTR_0016s03470g PE=4 SV=1
Gene Ontology
ID GO:0004672
description cdpk-related kinase 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52912: 62693-62808
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000066_040 0.0 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
2 Hb_009193_010 0.0762024919 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
3 Hb_002805_090 0.085768873 - - Ran GTPase binding protein, putative [Ricinus communis]
4 Hb_001109_160 0.093867199 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000665_200 0.095188936 - - calcineurin-like phosphoesterase [Manihot esculenta]
6 Hb_000025_500 0.1009891739 - - Ran GTPase binding protein, putative [Ricinus communis]
7 Hb_004041_030 0.1015389042 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
8 Hb_000510_190 0.1015579926 - - glutathione reductase [Hevea brasiliensis]
9 Hb_013399_090 0.1015872988 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
10 Hb_001969_130 0.1032304382 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
11 Hb_000445_370 0.1034784598 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
12 Hb_001221_300 0.1053218401 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
13 Hb_006916_030 0.1100671552 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
14 Hb_005588_120 0.1105973218 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001821_060 0.1111054616 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
16 Hb_001865_100 0.1128247364 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
17 Hb_010381_020 0.1129295552 - - Endosomal P24A protein precursor, putative [Ricinus communis]
18 Hb_002026_030 0.1133458392 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
19 Hb_011174_080 0.1136124155 - - PREDICTED: sulfite oxidase [Jatropha curcas]
20 Hb_000414_080 0.1138415279 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000066_040 Hb_000066_040 Hb_009193_010 Hb_009193_010 Hb_000066_040--Hb_009193_010 Hb_002805_090 Hb_002805_090 Hb_000066_040--Hb_002805_090 Hb_001109_160 Hb_001109_160 Hb_000066_040--Hb_001109_160 Hb_000665_200 Hb_000665_200 Hb_000066_040--Hb_000665_200 Hb_000025_500 Hb_000025_500 Hb_000066_040--Hb_000025_500 Hb_004041_030 Hb_004041_030 Hb_000066_040--Hb_004041_030 Hb_001821_060 Hb_001821_060 Hb_009193_010--Hb_001821_060 Hb_000256_160 Hb_000256_160 Hb_009193_010--Hb_000256_160 Hb_000510_190 Hb_000510_190 Hb_009193_010--Hb_000510_190 Hb_000414_080 Hb_000414_080 Hb_009193_010--Hb_000414_080 Hb_000997_290 Hb_000997_290 Hb_009193_010--Hb_000997_290 Hb_002311_130 Hb_002311_130 Hb_002805_090--Hb_002311_130 Hb_005116_140 Hb_005116_140 Hb_002805_090--Hb_005116_140 Hb_001998_220 Hb_001998_220 Hb_002805_090--Hb_001998_220 Hb_002805_090--Hb_000025_500 Hb_011174_080 Hb_011174_080 Hb_002805_090--Hb_011174_080 Hb_006916_030 Hb_006916_030 Hb_001109_160--Hb_006916_030 Hb_008616_040 Hb_008616_040 Hb_001109_160--Hb_008616_040 Hb_001250_020 Hb_001250_020 Hb_001109_160--Hb_001250_020 Hb_003029_140 Hb_003029_140 Hb_001109_160--Hb_003029_140 Hb_000906_070 Hb_000906_070 Hb_001109_160--Hb_000906_070 Hb_002026_030 Hb_002026_030 Hb_000665_200--Hb_002026_030 Hb_001865_100 Hb_001865_100 Hb_000665_200--Hb_001865_100 Hb_001969_130 Hb_001969_130 Hb_000665_200--Hb_001969_130 Hb_004052_110 Hb_004052_110 Hb_000665_200--Hb_004052_110 Hb_001221_300 Hb_001221_300 Hb_000665_200--Hb_001221_300 Hb_000167_120 Hb_000167_120 Hb_000025_500--Hb_000167_120 Hb_000025_500--Hb_001221_300 Hb_052946_010 Hb_052946_010 Hb_000025_500--Hb_052946_010 Hb_001998_150 Hb_001998_150 Hb_000025_500--Hb_001998_150 Hb_001341_010 Hb_001341_010 Hb_000025_500--Hb_001341_010 Hb_000025_500--Hb_004041_030 Hb_002150_020 Hb_002150_020 Hb_004041_030--Hb_002150_020 Hb_005305_020 Hb_005305_020 Hb_004041_030--Hb_005305_020 Hb_004041_030--Hb_001221_300 Hb_004041_030--Hb_052946_010 Hb_001405_080 Hb_001405_080 Hb_004041_030--Hb_001405_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.971593 6.38999 6.32262 7.99283 1.96662 1.45746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03265 0.984442 1.7534 5.93707 13.1523

CAGE analysis