Hb_005305_020

Information

Type -
Description -
Location Contig5305: 13813-17449
Sequence    

Annotation

kegg
ID rcu:RCOM_1578230
description 2-oxoglutarate/malate translocator, chloroplast precursor, putative
nr
ID XP_012089998.1
description PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LXV3
description Dicarboxylate transporter 1, chloroplastic OS=Arabidopsis thaliana GN=DIT1 PE=1 SV=1
trembl
ID A0A067JQ17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25921 PE=4 SV=1
Gene Ontology
ID GO:0005739
description dicarboxylate transporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47325: 13883-17430
cDNA
(Sanger)
(ID:Location)		 010_P05.ab1: 14411-16418

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005305_020 0.0 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
2 Hb_002150_020 0.0753346983 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_004041_030 0.0818859303 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
4 Hb_055690_010 0.0886033298 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
5 Hb_003124_120 0.0952533119 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
6 Hb_004672_020 0.1009136911 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
7 Hb_001307_100 0.1014359297 - - calmodulin binding protein, putative [Ricinus communis]
8 Hb_001214_050 0.1032881342 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
9 Hb_000114_150 0.1033597797 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
10 Hb_000983_070 0.1035483052 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008375_010 0.1056054101 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
12 Hb_000599_210 0.1060696238 - - serine/threonine-protein kinase, putative [Ricinus communis]
13 Hb_032631_070 0.1066685992 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
14 Hb_001105_100 0.1068564498 - - PREDICTED: cathepsin B [Jatropha curcas]
15 Hb_000397_150 0.109118636 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
16 Hb_000035_350 0.109486733 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
17 Hb_030736_040 0.1096942779 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
18 Hb_000358_020 0.1097403641 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
19 Hb_002075_030 0.1107048383 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
20 Hb_001009_260 0.1131047525 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005305_020 Hb_005305_020 Hb_002150_020 Hb_002150_020 Hb_005305_020--Hb_002150_020 Hb_004041_030 Hb_004041_030 Hb_005305_020--Hb_004041_030 Hb_055690_010 Hb_055690_010 Hb_005305_020--Hb_055690_010 Hb_003124_120 Hb_003124_120 Hb_005305_020--Hb_003124_120 Hb_004672_020 Hb_004672_020 Hb_005305_020--Hb_004672_020 Hb_001307_100 Hb_001307_100 Hb_005305_020--Hb_001307_100 Hb_002150_020--Hb_004041_030 Hb_005571_010 Hb_005571_010 Hb_002150_020--Hb_005571_010 Hb_002150_020--Hb_055690_010 Hb_001009_260 Hb_001009_260 Hb_002150_020--Hb_001009_260 Hb_032631_070 Hb_032631_070 Hb_002150_020--Hb_032631_070 Hb_001221_300 Hb_001221_300 Hb_004041_030--Hb_001221_300 Hb_052946_010 Hb_052946_010 Hb_004041_030--Hb_052946_010 Hb_000025_500 Hb_000025_500 Hb_004041_030--Hb_000025_500 Hb_001405_080 Hb_001405_080 Hb_004041_030--Hb_001405_080 Hb_000585_110 Hb_000585_110 Hb_055690_010--Hb_000585_110 Hb_030736_040 Hb_030736_040 Hb_055690_010--Hb_030736_040 Hb_000358_020 Hb_000358_020 Hb_055690_010--Hb_000358_020 Hb_008375_010 Hb_008375_010 Hb_055690_010--Hb_008375_010 Hb_055690_010--Hb_005571_010 Hb_000816_200 Hb_000816_200 Hb_003124_120--Hb_000816_200 Hb_010128_020 Hb_010128_020 Hb_003124_120--Hb_010128_020 Hb_016461_030 Hb_016461_030 Hb_003124_120--Hb_016461_030 Hb_001677_220 Hb_001677_220 Hb_003124_120--Hb_001677_220 Hb_000983_070 Hb_000983_070 Hb_003124_120--Hb_000983_070 Hb_002075_030 Hb_002075_030 Hb_003124_120--Hb_002075_030 Hb_004672_020--Hb_001307_100 Hb_004672_020--Hb_004041_030 Hb_004672_020--Hb_002150_020 Hb_004672_020--Hb_032631_070 Hb_000175_050 Hb_000175_050 Hb_004672_020--Hb_000175_050 Hb_001307_100--Hb_002075_030 Hb_000579_040 Hb_000579_040 Hb_001307_100--Hb_000579_040 Hb_068804_090 Hb_068804_090 Hb_001307_100--Hb_068804_090 Hb_000088_260 Hb_000088_260 Hb_001307_100--Hb_000088_260 Hb_001307_100--Hb_032631_070 Hb_138585_030 Hb_138585_030 Hb_001307_100--Hb_138585_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.77305 23.8732 31.651 36.0375 5.69021 8.63652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1036 18.7463 19.4392 23.0478 81.3417

CAGE analysis