Hb_000175_050

Information

Type -
Description -
Location Contig175: 21410-33577
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16665: 21677-22353
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_050 0.0 - - -
2 Hb_011053_030 0.0887926246 - - -
3 Hb_007904_040 0.0961021108 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
4 Hb_000152_480 0.0972299787 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
5 Hb_002075_030 0.1007361112 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
6 Hb_005489_090 0.1086761452 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
7 Hb_000032_140 0.1129148715 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004672_020 0.1129549949 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
9 Hb_000397_150 0.1129787204 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
10 Hb_032631_070 0.1155806532 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
11 Hb_000834_080 0.1159172366 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
12 Hb_000042_290 0.1170314735 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
13 Hb_000983_070 0.1178048227 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003935_080 0.1189474001 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
15 Hb_000579_040 0.1199616453 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
16 Hb_001269_500 0.120377122 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
17 Hb_001628_120 0.1215389439 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
18 Hb_002053_010 0.1229086183 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
19 Hb_000388_060 0.1232525829 - - fructokinase [Manihot esculenta]
20 Hb_027445_100 0.1233365918 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_050 Hb_000175_050 Hb_011053_030 Hb_011053_030 Hb_000175_050--Hb_011053_030 Hb_007904_040 Hb_007904_040 Hb_000175_050--Hb_007904_040 Hb_000152_480 Hb_000152_480 Hb_000175_050--Hb_000152_480 Hb_002075_030 Hb_002075_030 Hb_000175_050--Hb_002075_030 Hb_005489_090 Hb_005489_090 Hb_000175_050--Hb_005489_090 Hb_000032_140 Hb_000032_140 Hb_000175_050--Hb_000032_140 Hb_000834_080 Hb_000834_080 Hb_011053_030--Hb_000834_080 Hb_000032_400 Hb_000032_400 Hb_011053_030--Hb_000032_400 Hb_026314_030 Hb_026314_030 Hb_011053_030--Hb_026314_030 Hb_000866_050 Hb_000866_050 Hb_011053_030--Hb_000866_050 Hb_126917_010 Hb_126917_010 Hb_011053_030--Hb_126917_010 Hb_007904_040--Hb_000032_140 Hb_001842_020 Hb_001842_020 Hb_007904_040--Hb_001842_020 Hb_004672_020 Hb_004672_020 Hb_007904_040--Hb_004672_020 Hb_007904_040--Hb_000032_400 Hb_002783_150 Hb_002783_150 Hb_007904_040--Hb_002783_150 Hb_000152_480--Hb_005489_090 Hb_000112_060 Hb_000112_060 Hb_000152_480--Hb_000112_060 Hb_000042_290 Hb_000042_290 Hb_000152_480--Hb_000042_290 Hb_007426_170 Hb_007426_170 Hb_000152_480--Hb_007426_170 Hb_036790_120 Hb_036790_120 Hb_000152_480--Hb_036790_120 Hb_032631_070 Hb_032631_070 Hb_002075_030--Hb_032631_070 Hb_001307_100 Hb_001307_100 Hb_002075_030--Hb_001307_100 Hb_000579_040 Hb_000579_040 Hb_002075_030--Hb_000579_040 Hb_007441_310 Hb_007441_310 Hb_002075_030--Hb_007441_310 Hb_003029_020 Hb_003029_020 Hb_002075_030--Hb_003029_020 Hb_010128_020 Hb_010128_020 Hb_002075_030--Hb_010128_020 Hb_001124_180 Hb_001124_180 Hb_005489_090--Hb_001124_180 Hb_003935_080 Hb_003935_080 Hb_005489_090--Hb_003935_080 Hb_000594_100 Hb_000594_100 Hb_005489_090--Hb_000594_100 Hb_010577_040 Hb_010577_040 Hb_005489_090--Hb_010577_040 Hb_005725_220 Hb_005725_220 Hb_005489_090--Hb_005725_220 Hb_001792_030 Hb_001792_030 Hb_005489_090--Hb_001792_030 Hb_000032_140--Hb_000042_290 Hb_000991_020 Hb_000991_020 Hb_000032_140--Hb_000991_020 Hb_000032_140--Hb_001842_020 Hb_000032_140--Hb_001124_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.45855 3.79888 11.9743 7.94801 0.999043 1.17439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.77476 4.8999 3.05892 3.1229 20.1371

CAGE analysis