Hb_004672_020

Information

Type -
Description -
Location Contig4672: 8718-13524
Sequence    

Annotation

kegg
ID rcu:RCOM_0596830
description Cell division protease ftsH, putative (EC:3.6.4.3)
nr
ID XP_012088130.1
description PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
swissprot
ID D1CDT8
description ATP-dependent zinc metalloprotease FtsH OS=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) GN=ftsH PE=3 SV=1
trembl
ID A0A067JK38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25642 PE=3 SV=1
Gene Ontology
ID GO:0009941
description atp-dependent zinc metalloprotease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44112: 8766-14923
cDNA
(Sanger)
(ID:Location)		 015_I10.ab1: 8783-9495 , 043_O03.ab1: 8766-9455 , 050_O23.ab1: 8783-9563

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004672_020 0.0 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
2 Hb_005305_020 0.1009136911 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
3 Hb_001307_100 0.1059948519 - - calmodulin binding protein, putative [Ricinus communis]
4 Hb_004041_030 0.1100934783 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
5 Hb_002150_020 0.1111194207 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_032631_070 0.1123571583 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
7 Hb_000175_050 0.1129549949 - - -
8 Hb_000579_040 0.1139230792 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
9 Hb_000397_150 0.1180069535 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
10 Hb_027445_100 0.1198773153 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
11 Hb_000140_060 0.1205148535 - - 50S ribosomal protein L5, putative [Ricinus communis]
12 Hb_001221_300 0.1223822281 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
13 Hb_000834_080 0.1227900247 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
14 Hb_001842_020 0.1241399379 - - PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Jatropha curcas]
15 Hb_011053_030 0.1241830404 - - -
16 Hb_007904_040 0.1248861332 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
17 Hb_001628_120 0.1264047957 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
18 Hb_000762_110 0.1266867026 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
19 Hb_000376_210 0.1270434219 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
20 Hb_008375_010 0.1302260057 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_004672_020 Hb_004672_020 Hb_005305_020 Hb_005305_020 Hb_004672_020--Hb_005305_020 Hb_001307_100 Hb_001307_100 Hb_004672_020--Hb_001307_100 Hb_004041_030 Hb_004041_030 Hb_004672_020--Hb_004041_030 Hb_002150_020 Hb_002150_020 Hb_004672_020--Hb_002150_020 Hb_032631_070 Hb_032631_070 Hb_004672_020--Hb_032631_070 Hb_000175_050 Hb_000175_050 Hb_004672_020--Hb_000175_050 Hb_005305_020--Hb_002150_020 Hb_005305_020--Hb_004041_030 Hb_055690_010 Hb_055690_010 Hb_005305_020--Hb_055690_010 Hb_003124_120 Hb_003124_120 Hb_005305_020--Hb_003124_120 Hb_005305_020--Hb_001307_100 Hb_002075_030 Hb_002075_030 Hb_001307_100--Hb_002075_030 Hb_000579_040 Hb_000579_040 Hb_001307_100--Hb_000579_040 Hb_068804_090 Hb_068804_090 Hb_001307_100--Hb_068804_090 Hb_000088_260 Hb_000088_260 Hb_001307_100--Hb_000088_260 Hb_001307_100--Hb_032631_070 Hb_138585_030 Hb_138585_030 Hb_001307_100--Hb_138585_030 Hb_004041_030--Hb_002150_020 Hb_001221_300 Hb_001221_300 Hb_004041_030--Hb_001221_300 Hb_052946_010 Hb_052946_010 Hb_004041_030--Hb_052946_010 Hb_000025_500 Hb_000025_500 Hb_004041_030--Hb_000025_500 Hb_001405_080 Hb_001405_080 Hb_004041_030--Hb_001405_080 Hb_005571_010 Hb_005571_010 Hb_002150_020--Hb_005571_010 Hb_002150_020--Hb_055690_010 Hb_001009_260 Hb_001009_260 Hb_002150_020--Hb_001009_260 Hb_002150_020--Hb_032631_070 Hb_032631_070--Hb_000579_040 Hb_007441_310 Hb_007441_310 Hb_032631_070--Hb_007441_310 Hb_032631_070--Hb_002075_030 Hb_032631_070--Hb_138585_030 Hb_000585_110 Hb_000585_110 Hb_032631_070--Hb_000585_110 Hb_011053_030 Hb_011053_030 Hb_000175_050--Hb_011053_030 Hb_007904_040 Hb_007904_040 Hb_000175_050--Hb_007904_040 Hb_000152_480 Hb_000152_480 Hb_000175_050--Hb_000152_480 Hb_000175_050--Hb_002075_030 Hb_005489_090 Hb_005489_090 Hb_000175_050--Hb_005489_090 Hb_000032_140 Hb_000032_140 Hb_000175_050--Hb_000032_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.945369 7.03382 10.2549 10.4827 1.29484 2.23613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.55718 3.51289 2.55262 4.49061 20.7196

CAGE analysis