Hb_032631_070

Information

Type -
Description -
Location Contig32631: 46184-56113
Sequence    

Annotation

kegg
ID rcu:RCOM_0468850
description hypothetical protein
nr
ID XP_012078000.1
description PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q08BT5
description LisH domain and HEAT repeat-containing protein KIAA1468 homolog OS=Xenopus tropicalis PE=2 SV=1
trembl
ID F6HSQ4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g02520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34332: 46364-56025 , PASA_asmbl_34333: 55220-55825 , PASA_asmbl_34334: 52698-56025 , PASA_asmbl_34336: 55215-55825 , PASA_asmbl_34337: 46466-51291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032631_070 0.0 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
2 Hb_000579_040 0.0484034532 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
3 Hb_007441_310 0.0681284984 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
4 Hb_002075_030 0.0741006873 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
5 Hb_002150_020 0.0748567827 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_138585_030 0.0865701383 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
7 Hb_000585_110 0.0871062752 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
8 Hb_001307_100 0.0887306754 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_001628_120 0.0911460588 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
10 Hb_008375_010 0.0915565699 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
11 Hb_002249_080 0.091893133 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
12 Hb_055690_010 0.0929057754 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
13 Hb_001143_100 0.0947077164 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
14 Hb_003994_080 0.0950583546 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
15 Hb_004041_030 0.0964949565 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
16 Hb_000510_190 0.0967151098 - - glutathione reductase [Hevea brasiliensis]
17 Hb_001009_260 0.0978656198 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
18 Hb_000414_080 0.0981490703 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
19 Hb_003355_010 0.0985534183 - - Heat shock 70 kDa protein, putative [Ricinus communis]
20 Hb_000397_150 0.0986777056 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_032631_070 Hb_032631_070 Hb_000579_040 Hb_000579_040 Hb_032631_070--Hb_000579_040 Hb_007441_310 Hb_007441_310 Hb_032631_070--Hb_007441_310 Hb_002075_030 Hb_002075_030 Hb_032631_070--Hb_002075_030 Hb_002150_020 Hb_002150_020 Hb_032631_070--Hb_002150_020 Hb_138585_030 Hb_138585_030 Hb_032631_070--Hb_138585_030 Hb_000585_110 Hb_000585_110 Hb_032631_070--Hb_000585_110 Hb_025194_090 Hb_025194_090 Hb_000579_040--Hb_025194_090 Hb_000579_040--Hb_002075_030 Hb_000579_040--Hb_138585_030 Hb_001307_100 Hb_001307_100 Hb_000579_040--Hb_001307_100 Hb_001143_100 Hb_001143_100 Hb_000579_040--Hb_001143_100 Hb_008375_010 Hb_008375_010 Hb_007441_310--Hb_008375_010 Hb_007441_310--Hb_000585_110 Hb_000397_150 Hb_000397_150 Hb_007441_310--Hb_000397_150 Hb_055690_010 Hb_055690_010 Hb_007441_310--Hb_055690_010 Hb_001195_770 Hb_001195_770 Hb_007441_310--Hb_001195_770 Hb_002075_030--Hb_001307_100 Hb_002075_030--Hb_007441_310 Hb_003029_020 Hb_003029_020 Hb_002075_030--Hb_003029_020 Hb_010128_020 Hb_010128_020 Hb_002075_030--Hb_010128_020 Hb_004041_030 Hb_004041_030 Hb_002150_020--Hb_004041_030 Hb_005571_010 Hb_005571_010 Hb_002150_020--Hb_005571_010 Hb_002150_020--Hb_055690_010 Hb_001009_260 Hb_001009_260 Hb_002150_020--Hb_001009_260 Hb_005305_020 Hb_005305_020 Hb_002150_020--Hb_005305_020 Hb_004705_160 Hb_004705_160 Hb_138585_030--Hb_004705_160 Hb_010344_020 Hb_010344_020 Hb_138585_030--Hb_010344_020 Hb_000116_250 Hb_000116_250 Hb_138585_030--Hb_000116_250 Hb_010620_050 Hb_010620_050 Hb_138585_030--Hb_010620_050 Hb_068804_090 Hb_068804_090 Hb_138585_030--Hb_068804_090 Hb_000585_110--Hb_055690_010 Hb_002249_080 Hb_002249_080 Hb_000585_110--Hb_002249_080 Hb_000007_090 Hb_000007_090 Hb_000585_110--Hb_000007_090 Hb_019654_020 Hb_019654_020 Hb_000585_110--Hb_019654_020 Hb_000417_390 Hb_000417_390 Hb_000585_110--Hb_000417_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.3374 5.01312 14.899 12.6334 2.43776 3.03757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.14134 4.30551 4.03227 7.39868 23.7056

CAGE analysis