Hb_008375_010

Information

Type -
Description -
Location Contig8375: 8616-11782
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_009338807.1
description PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID M1BA67
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401015717 PE=4 SV=1
Gene Ontology
ID GO:0004527
description carbon catabolite repressor protein 4 homolog 4 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60013: 8620-49762 , PASA_asmbl_60014: 8692-12408
cDNA
(Sanger)
(ID:Location)		 050_I23.ab1: 8620-49762

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008375_010 0.0 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
2 Hb_007441_310 0.0637943783 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
3 Hb_055690_010 0.0700914828 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
4 Hb_000585_110 0.0818404167 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
5 Hb_008147_080 0.0865944693 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
6 Hb_002075_030 0.0882103519 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
7 Hb_000008_350 0.0891740716 - - -
8 Hb_000816_200 0.0911543001 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
9 Hb_032631_070 0.0915565699 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
10 Hb_002281_020 0.0923857149 - - PREDICTED: actin-related protein 8 [Jatropha curcas]
11 Hb_003440_020 0.0937288209 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_002150_020 0.094971887 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_003875_030 0.0949810082 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
14 Hb_004644_030 0.0974804875 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
15 Hb_030736_040 0.0976072714 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
16 Hb_001195_770 0.0988004623 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
17 Hb_003124_120 0.0997423421 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
18 Hb_001789_200 0.1002685071 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
19 Hb_001677_220 0.1003225112 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
20 Hb_001143_100 0.1009613443 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]

Gene co-expression network

sample Hb_008375_010 Hb_008375_010 Hb_007441_310 Hb_007441_310 Hb_008375_010--Hb_007441_310 Hb_055690_010 Hb_055690_010 Hb_008375_010--Hb_055690_010 Hb_000585_110 Hb_000585_110 Hb_008375_010--Hb_000585_110 Hb_008147_080 Hb_008147_080 Hb_008375_010--Hb_008147_080 Hb_002075_030 Hb_002075_030 Hb_008375_010--Hb_002075_030 Hb_000008_350 Hb_000008_350 Hb_008375_010--Hb_000008_350 Hb_032631_070 Hb_032631_070 Hb_007441_310--Hb_032631_070 Hb_007441_310--Hb_000585_110 Hb_000397_150 Hb_000397_150 Hb_007441_310--Hb_000397_150 Hb_007441_310--Hb_055690_010 Hb_001195_770 Hb_001195_770 Hb_007441_310--Hb_001195_770 Hb_055690_010--Hb_000585_110 Hb_030736_040 Hb_030736_040 Hb_055690_010--Hb_030736_040 Hb_000358_020 Hb_000358_020 Hb_055690_010--Hb_000358_020 Hb_002150_020 Hb_002150_020 Hb_055690_010--Hb_002150_020 Hb_005571_010 Hb_005571_010 Hb_055690_010--Hb_005571_010 Hb_002249_080 Hb_002249_080 Hb_000585_110--Hb_002249_080 Hb_000007_090 Hb_000007_090 Hb_000585_110--Hb_000007_090 Hb_019654_020 Hb_019654_020 Hb_000585_110--Hb_019654_020 Hb_000417_390 Hb_000417_390 Hb_000585_110--Hb_000417_390 Hb_004644_030 Hb_004644_030 Hb_008147_080--Hb_004644_030 Hb_005218_080 Hb_005218_080 Hb_008147_080--Hb_005218_080 Hb_001578_020 Hb_001578_020 Hb_008147_080--Hb_001578_020 Hb_000388_060 Hb_000388_060 Hb_008147_080--Hb_000388_060 Hb_000077_150 Hb_000077_150 Hb_008147_080--Hb_000077_150 Hb_002075_030--Hb_032631_070 Hb_001307_100 Hb_001307_100 Hb_002075_030--Hb_001307_100 Hb_000579_040 Hb_000579_040 Hb_002075_030--Hb_000579_040 Hb_002075_030--Hb_007441_310 Hb_003029_020 Hb_003029_020 Hb_002075_030--Hb_003029_020 Hb_010128_020 Hb_010128_020 Hb_002075_030--Hb_010128_020 Hb_001677_220 Hb_001677_220 Hb_000008_350--Hb_001677_220 Hb_004339_030 Hb_004339_030 Hb_000008_350--Hb_004339_030 Hb_000008_350--Hb_008147_080 Hb_000816_200 Hb_000816_200 Hb_000008_350--Hb_000816_200 Hb_003124_120 Hb_003124_120 Hb_000008_350--Hb_003124_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08384 2.57066 7.37315 7.10289 1.31987 2.89534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.4071 3.0595 2.9575 5.45402 13.2755

CAGE analysis