Hb_000032_140

Information

Type -
Description -
Location Contig32: 115663-117784
Sequence    

Annotation

kegg
ID rcu:RCOM_1691420
description hypothetical protein
nr
ID XP_002509940.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCQ6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691420 PE=4 SV=1
Gene Ontology
ID GO:0016740
description 1-acyl-sn-glycerol-3-phosphate acyltransferase delta isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33697: 115687-117774 , PASA_asmbl_33698: 116282-116466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007904_040 0.1075370721 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
3 Hb_000042_290 0.1100380744 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
4 Hb_000175_050 0.1129148715 - - -
5 Hb_000991_020 0.1199878425 - - amino acid transporter, putative [Ricinus communis]
6 Hb_001842_020 0.1241490904 - - PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Jatropha curcas]
7 Hb_001124_180 0.1292869658 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
8 Hb_003935_080 0.131668195 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
9 Hb_005489_090 0.1343882422 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
10 Hb_000395_010 0.1347390494 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
11 Hb_000152_480 0.1357733494 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
12 Hb_001269_070 0.1363652417 - - double-stranded RNA binding protein, putative [Ricinus communis]
13 Hb_000176_010 0.1442768135 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
14 Hb_002150_130 0.1466869028 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
15 Hb_001322_230 0.1472046788 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
16 Hb_000388_060 0.1482558388 - - fructokinase [Manihot esculenta]
17 Hb_000594_100 0.1491047004 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
18 Hb_002374_300 0.1495481634 - - hypothetical protein JCGZ_12140 [Jatropha curcas]
19 Hb_008179_010 0.1520967753 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
20 Hb_000368_120 0.1532014698 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]

Gene co-expression network

sample Hb_000032_140 Hb_000032_140 Hb_007904_040 Hb_007904_040 Hb_000032_140--Hb_007904_040 Hb_000042_290 Hb_000042_290 Hb_000032_140--Hb_000042_290 Hb_000175_050 Hb_000175_050 Hb_000032_140--Hb_000175_050 Hb_000991_020 Hb_000991_020 Hb_000032_140--Hb_000991_020 Hb_001842_020 Hb_001842_020 Hb_000032_140--Hb_001842_020 Hb_001124_180 Hb_001124_180 Hb_000032_140--Hb_001124_180 Hb_007904_040--Hb_000175_050 Hb_007904_040--Hb_001842_020 Hb_004672_020 Hb_004672_020 Hb_007904_040--Hb_004672_020 Hb_000032_400 Hb_000032_400 Hb_007904_040--Hb_000032_400 Hb_002783_150 Hb_002783_150 Hb_007904_040--Hb_002783_150 Hb_000042_290--Hb_001124_180 Hb_002150_130 Hb_002150_130 Hb_000042_290--Hb_002150_130 Hb_005489_090 Hb_005489_090 Hb_000042_290--Hb_005489_090 Hb_000152_480 Hb_000152_480 Hb_000042_290--Hb_000152_480 Hb_003935_080 Hb_003935_080 Hb_000042_290--Hb_003935_080 Hb_000176_010 Hb_000176_010 Hb_000042_290--Hb_000176_010 Hb_011053_030 Hb_011053_030 Hb_000175_050--Hb_011053_030 Hb_000175_050--Hb_000152_480 Hb_002075_030 Hb_002075_030 Hb_000175_050--Hb_002075_030 Hb_000175_050--Hb_005489_090 Hb_000395_010 Hb_000395_010 Hb_000991_020--Hb_000395_010 Hb_000991_020--Hb_000175_050 Hb_000991_020--Hb_000042_290 Hb_169209_010 Hb_169209_010 Hb_000991_020--Hb_169209_010 Hb_000991_020--Hb_001124_180 Hb_016219_030 Hb_016219_030 Hb_001842_020--Hb_016219_030 Hb_000560_040 Hb_000560_040 Hb_001842_020--Hb_000560_040 Hb_002759_120 Hb_002759_120 Hb_001842_020--Hb_002759_120 Hb_002053_010 Hb_002053_010 Hb_001842_020--Hb_002053_010 Hb_000388_060 Hb_000388_060 Hb_001842_020--Hb_000388_060 Hb_001124_180--Hb_005489_090 Hb_001124_180--Hb_003935_080 Hb_005725_220 Hb_005725_220 Hb_001124_180--Hb_005725_220 Hb_000594_100 Hb_000594_100 Hb_001124_180--Hb_000594_100 Hb_001124_180--Hb_000176_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05097 3.82319 19.7955 15.1875 1.2143 0.779236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.7166 11.4743 2.82791 4.1769 32.617

CAGE analysis