Hb_169209_010

Information

Type -
Description -
Location Contig169209: 7015-13422
Sequence    

Annotation

kegg
ID rcu:RCOM_1534040
description porphobilinogen deaminase, putative (EC:2.5.1.61)
nr
ID XP_012072847.1
description PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
swissprot
ID Q43082
description Porphobilinogen deaminase, chloroplastic OS=Pisum sativum GN=HEMC PE=1 SV=1
trembl
ID A0A067KZ66
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05999 PE=3 SV=1
Gene Ontology
ID GO:0009570
description porphobilinogen chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15745: 7067-13190 , PASA_asmbl_15746: 7260-13139
cDNA
(Sanger)
(ID:Location)		 039_L07.ab1: 8690-13193

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169209_010 0.0 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
2 Hb_002498_160 0.1004842358 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
3 Hb_000473_050 0.1041459712 - - chromatin regulatory protein sir2, putative [Ricinus communis]
4 Hb_001124_190 0.1079153422 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000922_340 0.1259317346 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
6 Hb_012653_030 0.1267285495 - - PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_000820_140 0.1290334333 - - histone H4 [Zea mays]
8 Hb_000042_290 0.1349407578 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
9 Hb_001711_060 0.1349522037 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
10 Hb_189003_060 0.1357233944 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_001124_180 0.1371808521 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
12 Hb_000676_020 0.1393671886 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
13 Hb_000991_020 0.1395757606 - - amino acid transporter, putative [Ricinus communis]
14 Hb_012545_040 0.1400937504 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_003209_010 0.1423229492 - - hypothetical protein POPTR_0010s16880g [Populus trichocarpa]
16 Hb_000110_230 0.1424790257 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
17 Hb_005563_040 0.1430939398 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
18 Hb_000005_130 0.1432057321 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
19 Hb_006829_080 0.1442702309 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
20 Hb_007426_170 0.1470195022 transcription factor TF Family: TCP -

Gene co-expression network

sample Hb_169209_010 Hb_169209_010 Hb_002498_160 Hb_002498_160 Hb_169209_010--Hb_002498_160 Hb_000473_050 Hb_000473_050 Hb_169209_010--Hb_000473_050 Hb_001124_190 Hb_001124_190 Hb_169209_010--Hb_001124_190 Hb_000922_340 Hb_000922_340 Hb_169209_010--Hb_000922_340 Hb_012653_030 Hb_012653_030 Hb_169209_010--Hb_012653_030 Hb_000820_140 Hb_000820_140 Hb_169209_010--Hb_000820_140 Hb_000676_020 Hb_000676_020 Hb_002498_160--Hb_000676_020 Hb_002498_160--Hb_000473_050 Hb_000608_390 Hb_000608_390 Hb_002498_160--Hb_000608_390 Hb_002044_020 Hb_002044_020 Hb_002498_160--Hb_002044_020 Hb_002986_090 Hb_002986_090 Hb_002498_160--Hb_002986_090 Hb_006829_080 Hb_006829_080 Hb_000473_050--Hb_006829_080 Hb_189003_060 Hb_189003_060 Hb_000473_050--Hb_189003_060 Hb_158092_100 Hb_158092_100 Hb_000473_050--Hb_158092_100 Hb_009687_020 Hb_009687_020 Hb_000473_050--Hb_009687_020 Hb_001959_060 Hb_001959_060 Hb_000473_050--Hb_001959_060 Hb_000684_430 Hb_000684_430 Hb_000473_050--Hb_000684_430 Hb_001124_180 Hb_001124_180 Hb_001124_190--Hb_001124_180 Hb_005914_050 Hb_005914_050 Hb_001124_190--Hb_005914_050 Hb_000042_290 Hb_000042_290 Hb_001124_190--Hb_000042_290 Hb_001124_190--Hb_000676_020 Hb_000176_010 Hb_000176_010 Hb_001124_190--Hb_000176_010 Hb_003209_010 Hb_003209_010 Hb_000922_340--Hb_003209_010 Hb_000922_340--Hb_000473_050 Hb_000922_340--Hb_000042_290 Hb_042083_040 Hb_042083_040 Hb_000922_340--Hb_042083_040 Hb_005333_200 Hb_005333_200 Hb_000922_340--Hb_005333_200 Hb_000120_990 Hb_000120_990 Hb_000922_340--Hb_000120_990 Hb_000194_010 Hb_000194_010 Hb_012653_030--Hb_000194_010 Hb_005618_080 Hb_005618_080 Hb_012653_030--Hb_005618_080 Hb_012653_030--Hb_002044_020 Hb_001711_060 Hb_001711_060 Hb_012653_030--Hb_001711_060 Hb_000438_130 Hb_000438_130 Hb_012653_030--Hb_000438_130 Hb_012653_030--Hb_000473_050 Hb_001322_230 Hb_001322_230 Hb_000820_140--Hb_001322_230 Hb_068194_010 Hb_068194_010 Hb_000820_140--Hb_068194_010 Hb_000307_070 Hb_000307_070 Hb_000820_140--Hb_000307_070 Hb_000820_140--Hb_000676_020 Hb_001587_040 Hb_001587_040 Hb_000820_140--Hb_001587_040 Hb_004348_040 Hb_004348_040 Hb_000820_140--Hb_004348_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.97232 4.26802 76.6822 26.1155 4.98815 6.0463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.084 15.3567 21.4005 12.5676 73.4666

CAGE analysis