Hb_001124_190

Information

Type -
Description -
Location Contig1124: 204082-206804
Sequence    

Annotation

kegg
ID rcu:RCOM_0679730
description hypothetical protein
nr
ID XP_002516868.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RSZ9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0679730 PE=4 SV=1
Gene Ontology
ID GO:0009570
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03818: 193547-206675 , PASA_asmbl_03820: 204672-204977
cDNA
(Sanger)
(ID:Location)		 014_G02.ab1: 193547-205786 , 025_N19.ab1: 193547-205132 , 035_E14.ab1: 193547-204927 , 053_L19.ab1: 193547-205104

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001124_180 0.0952604983 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
3 Hb_169209_010 0.1079153422 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
4 Hb_005914_050 0.1108391578 - - PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
5 Hb_000042_290 0.1124099654 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
6 Hb_000676_020 0.1129989907 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
7 Hb_000176_010 0.1163794851 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
8 Hb_009178_070 0.1180513369 - - PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Jatropha curcas]
9 Hb_002986_090 0.12163622 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_002150_130 0.1218646511 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
11 Hb_005489_090 0.12372814 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
12 Hb_088500_010 0.1238955251 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Jatropha curcas]
13 Hb_000922_340 0.1248111407 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
14 Hb_002498_160 0.1260239653 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
15 Hb_005725_220 0.127390057 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
16 Hb_001277_100 0.1295925343 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
17 Hb_000473_050 0.1298584642 - - chromatin regulatory protein sir2, putative [Ricinus communis]
18 Hb_007426_170 0.1309601682 transcription factor TF Family: TCP -
19 Hb_000820_140 0.1310513308 - - histone H4 [Zea mays]
20 Hb_000627_300 0.1319286114 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]

Gene co-expression network

sample Hb_001124_190 Hb_001124_190 Hb_001124_180 Hb_001124_180 Hb_001124_190--Hb_001124_180 Hb_169209_010 Hb_169209_010 Hb_001124_190--Hb_169209_010 Hb_005914_050 Hb_005914_050 Hb_001124_190--Hb_005914_050 Hb_000042_290 Hb_000042_290 Hb_001124_190--Hb_000042_290 Hb_000676_020 Hb_000676_020 Hb_001124_190--Hb_000676_020 Hb_000176_010 Hb_000176_010 Hb_001124_190--Hb_000176_010 Hb_005489_090 Hb_005489_090 Hb_001124_180--Hb_005489_090 Hb_003935_080 Hb_003935_080 Hb_001124_180--Hb_003935_080 Hb_005725_220 Hb_005725_220 Hb_001124_180--Hb_005725_220 Hb_001124_180--Hb_000042_290 Hb_000594_100 Hb_000594_100 Hb_001124_180--Hb_000594_100 Hb_001124_180--Hb_000176_010 Hb_002498_160 Hb_002498_160 Hb_169209_010--Hb_002498_160 Hb_000473_050 Hb_000473_050 Hb_169209_010--Hb_000473_050 Hb_000922_340 Hb_000922_340 Hb_169209_010--Hb_000922_340 Hb_012653_030 Hb_012653_030 Hb_169209_010--Hb_012653_030 Hb_000820_140 Hb_000820_140 Hb_169209_010--Hb_000820_140 Hb_002150_130 Hb_002150_130 Hb_005914_050--Hb_002150_130 Hb_003209_010 Hb_003209_010 Hb_005914_050--Hb_003209_010 Hb_012545_040 Hb_012545_040 Hb_005914_050--Hb_012545_040 Hb_005914_050--Hb_000176_010 Hb_005914_050--Hb_000676_020 Hb_000042_290--Hb_002150_130 Hb_000042_290--Hb_005489_090 Hb_000152_480 Hb_000152_480 Hb_000042_290--Hb_000152_480 Hb_000042_290--Hb_003935_080 Hb_000042_290--Hb_000176_010 Hb_068194_010 Hb_068194_010 Hb_000676_020--Hb_068194_010 Hb_027506_040 Hb_027506_040 Hb_000676_020--Hb_027506_040 Hb_000676_020--Hb_002498_160 Hb_009851_010 Hb_009851_010 Hb_000676_020--Hb_009851_010 Hb_000676_020--Hb_000820_140 Hb_002205_140 Hb_002205_140 Hb_000676_020--Hb_002205_140 Hb_009780_050 Hb_009780_050 Hb_000176_010--Hb_009780_050 Hb_000627_300 Hb_000627_300 Hb_000176_010--Hb_000627_300 Hb_000176_010--Hb_002150_130 Hb_000167_050 Hb_000167_050 Hb_000176_010--Hb_000167_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.50686 1.18014 16.4664 7.53259 2.09905 1.37238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.2465 7.68601 5.12443 2.76784 17.0347

CAGE analysis