Hb_000594_100

Information

Type -
Description -
Location Contig594: 150162-157010
Sequence    

Annotation

kegg
ID rcu:RCOM_0705640
description methionine aminopeptidase, putative (EC:3.4.11.18)
nr
ID XP_012082032.1
description PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
swissprot
ID Q9FV52
description Methionine aminopeptidase 1B, chloroplastic OS=Arabidopsis thaliana GN=MAP1B PE=2 SV=2
trembl
ID A0A067JZR3
description Methionine aminopeptidase 1 OS=Jatropha curcas GN=JCGZ_18288 PE=3 SV=1
Gene Ontology
ID GO:0009507
description methionine aminopeptidase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50332: 150158-155203 , PASA_asmbl_50333: 150220-155190 , PASA_asmbl_50335: 157754-158254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000594_100 0.0 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
2 Hb_003935_080 0.0737487611 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
3 Hb_001373_130 0.0792685161 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005489_090 0.0835081643 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
5 Hb_001124_180 0.0937117516 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
6 Hb_010577_040 0.10111424 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
7 Hb_000983_070 0.1011557634 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001792_030 0.1065281368 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
9 Hb_010128_020 0.1108952992 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
10 Hb_000388_060 0.1180389568 - - fructokinase [Manihot esculenta]
11 Hb_001711_120 0.1208809557 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
12 Hb_000152_480 0.1215065171 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
13 Hb_000058_080 0.1234043102 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_001789_200 0.1246219959 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
15 Hb_000042_290 0.1261663812 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
16 Hb_005725_220 0.1267099297 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
17 Hb_000175_050 0.1268128046 - - -
18 Hb_002075_030 0.1315874614 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
19 Hb_000210_080 0.1353691421 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
20 Hb_002053_010 0.1362263877 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000594_100 Hb_000594_100 Hb_003935_080 Hb_003935_080 Hb_000594_100--Hb_003935_080 Hb_001373_130 Hb_001373_130 Hb_000594_100--Hb_001373_130 Hb_005489_090 Hb_005489_090 Hb_000594_100--Hb_005489_090 Hb_001124_180 Hb_001124_180 Hb_000594_100--Hb_001124_180 Hb_010577_040 Hb_010577_040 Hb_000594_100--Hb_010577_040 Hb_000983_070 Hb_000983_070 Hb_000594_100--Hb_000983_070 Hb_003935_080--Hb_005489_090 Hb_003935_080--Hb_010577_040 Hb_003935_080--Hb_001124_180 Hb_001792_030 Hb_001792_030 Hb_003935_080--Hb_001792_030 Hb_000866_050 Hb_000866_050 Hb_003935_080--Hb_000866_050 Hb_001373_130--Hb_000983_070 Hb_010128_020 Hb_010128_020 Hb_001373_130--Hb_010128_020 Hb_002529_090 Hb_002529_090 Hb_001373_130--Hb_002529_090 Hb_001373_130--Hb_005489_090 Hb_001373_130--Hb_003935_080 Hb_005489_090--Hb_001124_180 Hb_005489_090--Hb_010577_040 Hb_005725_220 Hb_005725_220 Hb_005489_090--Hb_005725_220 Hb_005489_090--Hb_001792_030 Hb_001124_180--Hb_005725_220 Hb_000042_290 Hb_000042_290 Hb_001124_180--Hb_000042_290 Hb_000176_010 Hb_000176_010 Hb_001124_180--Hb_000176_010 Hb_000723_290 Hb_000723_290 Hb_010577_040--Hb_000723_290 Hb_001621_060 Hb_001621_060 Hb_010577_040--Hb_001621_060 Hb_020378_060 Hb_020378_060 Hb_010577_040--Hb_020378_060 Hb_001898_180 Hb_001898_180 Hb_000983_070--Hb_001898_180 Hb_000983_070--Hb_010128_020 Hb_000816_200 Hb_000816_200 Hb_000983_070--Hb_000816_200 Hb_003124_120 Hb_003124_120 Hb_000983_070--Hb_003124_120 Hb_001629_090 Hb_001629_090 Hb_000983_070--Hb_001629_090 Hb_002053_010 Hb_002053_010 Hb_000983_070--Hb_002053_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24459 1.53478 11.4571 6.95463 1.2934 1.09993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.2699 8.09756 4.136 5.8511 22.0867

CAGE analysis