Hb_001373_130

Information

Type -
Description -
Location Contig1373: 96418-104113
Sequence    

Annotation

kegg
ID rcu:RCOM_1183380
description hypothetical protein
nr
ID XP_002527938.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q99JH1
description Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=2 SV=1
trembl
ID B9SPL9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1183380 PE=4 SV=1
Gene Ontology
ID GO:0003676
description h aca ribonucleoprotein complex subunit 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10307: 96501-104088
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001373_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000594_100 0.0792685161 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
3 Hb_000983_070 0.101535984 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010128_020 0.1133785824 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
5 Hb_002529_090 0.1184104457 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
6 Hb_005489_090 0.1192284603 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
7 Hb_003935_080 0.1226003546 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
8 Hb_001711_120 0.1287616844 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
9 Hb_010577_040 0.1288865001 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
10 Hb_001792_030 0.1297144474 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
11 Hb_000388_060 0.1338154717 - - fructokinase [Manihot esculenta]
12 Hb_002075_030 0.1420432982 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
13 Hb_000058_080 0.1427659833 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_000560_040 0.1432930837 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
15 Hb_001269_470 0.1440714109 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
16 Hb_000175_050 0.1452823478 - - -
17 Hb_003124_120 0.1466018114 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
18 Hb_001898_180 0.1479679656 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
19 Hb_000152_480 0.1489945323 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
20 Hb_001124_180 0.1498476311 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]

Gene co-expression network

sample Hb_001373_130 Hb_001373_130 Hb_000594_100 Hb_000594_100 Hb_001373_130--Hb_000594_100 Hb_000983_070 Hb_000983_070 Hb_001373_130--Hb_000983_070 Hb_010128_020 Hb_010128_020 Hb_001373_130--Hb_010128_020 Hb_002529_090 Hb_002529_090 Hb_001373_130--Hb_002529_090 Hb_005489_090 Hb_005489_090 Hb_001373_130--Hb_005489_090 Hb_003935_080 Hb_003935_080 Hb_001373_130--Hb_003935_080 Hb_000594_100--Hb_003935_080 Hb_000594_100--Hb_005489_090 Hb_001124_180 Hb_001124_180 Hb_000594_100--Hb_001124_180 Hb_010577_040 Hb_010577_040 Hb_000594_100--Hb_010577_040 Hb_000594_100--Hb_000983_070 Hb_001898_180 Hb_001898_180 Hb_000983_070--Hb_001898_180 Hb_000983_070--Hb_010128_020 Hb_000816_200 Hb_000816_200 Hb_000983_070--Hb_000816_200 Hb_003124_120 Hb_003124_120 Hb_000983_070--Hb_003124_120 Hb_001629_090 Hb_001629_090 Hb_000983_070--Hb_001629_090 Hb_002053_010 Hb_002053_010 Hb_000983_070--Hb_002053_010 Hb_003029_020 Hb_003029_020 Hb_010128_020--Hb_003029_020 Hb_010128_020--Hb_003124_120 Hb_002075_030 Hb_002075_030 Hb_010128_020--Hb_002075_030 Hb_010128_020--Hb_000816_200 Hb_000112_060 Hb_000112_060 Hb_010128_020--Hb_000112_060 Hb_000070_110 Hb_000070_110 Hb_002529_090--Hb_000070_110 Hb_000560_040 Hb_000560_040 Hb_002529_090--Hb_000560_040 Hb_003440_020 Hb_003440_020 Hb_002529_090--Hb_003440_020 Hb_004348_040 Hb_004348_040 Hb_002529_090--Hb_004348_040 Hb_000130_200 Hb_000130_200 Hb_002529_090--Hb_000130_200 Hb_002232_160 Hb_002232_160 Hb_002529_090--Hb_002232_160 Hb_005489_090--Hb_001124_180 Hb_005489_090--Hb_003935_080 Hb_005489_090--Hb_010577_040 Hb_005725_220 Hb_005725_220 Hb_005489_090--Hb_005725_220 Hb_001792_030 Hb_001792_030 Hb_005489_090--Hb_001792_030 Hb_003935_080--Hb_010577_040 Hb_003935_080--Hb_001124_180 Hb_003935_080--Hb_001792_030 Hb_000866_050 Hb_000866_050 Hb_003935_080--Hb_000866_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.65397 7.59053 24.7493 13.513 2.10476 2.94852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.00929 21.8468 8.92384 18.4162 54.8694

CAGE analysis