Hb_000112_060

Information

Type -
Description -
Location Contig112: 213327-225381
Sequence    

Annotation

kegg
ID rcu:RCOM_1452050
description electron transporter, putative
nr
ID XP_012068680.1
description PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
swissprot
ID Q9M7X9
description Thioredoxin-like protein CITRX, chloroplastic OS=Arabidopsis thaliana GN=CITRX PE=1 SV=1
trembl
ID A0A067L8W2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24543 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03625: 215011-218232
cDNA
(Sanger)
(ID:Location)		 012_H11.ab1: 215011-218178 , 039_L16.ab1: 215011-218201

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000112_060 0.0 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
2 Hb_010128_020 0.0979070939 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
3 Hb_036790_120 0.1037889263 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
4 Hb_007426_170 0.1041843564 transcription factor TF Family: TCP -
5 Hb_005276_010 0.1057305287 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
6 Hb_000152_480 0.1059551728 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
7 Hb_003029_020 0.1061955436 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
8 Hb_000059_270 0.1130475967 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
9 Hb_001889_010 0.1156919832 transcription factor TF Family: Orphans PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2 [Jatropha curcas]
10 Hb_000164_140 0.1187124685 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_001946_160 0.1191706492 - - putative chaperon P13.9 [Castanea sativa]
12 Hb_000548_060 0.1210328313 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
13 Hb_003813_020 0.1214853408 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
14 Hb_016461_030 0.1223726743 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_003171_030 0.1224202041 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
16 Hb_000983_070 0.1263445053 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000816_200 0.126883199 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
18 Hb_000976_190 0.1295321214 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
19 Hb_002290_030 0.1307535686 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
20 Hb_000110_230 0.1308820497 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000112_060 Hb_000112_060 Hb_010128_020 Hb_010128_020 Hb_000112_060--Hb_010128_020 Hb_036790_120 Hb_036790_120 Hb_000112_060--Hb_036790_120 Hb_007426_170 Hb_007426_170 Hb_000112_060--Hb_007426_170 Hb_005276_010 Hb_005276_010 Hb_000112_060--Hb_005276_010 Hb_000152_480 Hb_000152_480 Hb_000112_060--Hb_000152_480 Hb_003029_020 Hb_003029_020 Hb_000112_060--Hb_003029_020 Hb_010128_020--Hb_003029_020 Hb_003124_120 Hb_003124_120 Hb_010128_020--Hb_003124_120 Hb_000983_070 Hb_000983_070 Hb_010128_020--Hb_000983_070 Hb_002075_030 Hb_002075_030 Hb_010128_020--Hb_002075_030 Hb_000816_200 Hb_000816_200 Hb_010128_020--Hb_000816_200 Hb_000402_170 Hb_000402_170 Hb_036790_120--Hb_000402_170 Hb_000548_060 Hb_000548_060 Hb_036790_120--Hb_000548_060 Hb_000977_270 Hb_000977_270 Hb_036790_120--Hb_000977_270 Hb_000189_250 Hb_000189_250 Hb_036790_120--Hb_000189_250 Hb_000684_280 Hb_000684_280 Hb_036790_120--Hb_000684_280 Hb_036790_120--Hb_010128_020 Hb_000005_130 Hb_000005_130 Hb_007426_170--Hb_000005_130 Hb_001959_060 Hb_001959_060 Hb_007426_170--Hb_001959_060 Hb_006829_080 Hb_006829_080 Hb_007426_170--Hb_006829_080 Hb_007426_170--Hb_000548_060 Hb_000976_190 Hb_000976_190 Hb_007426_170--Hb_000976_190 Hb_001946_160 Hb_001946_160 Hb_005276_010--Hb_001946_160 Hb_000941_100 Hb_000941_100 Hb_005276_010--Hb_000941_100 Hb_000164_140 Hb_000164_140 Hb_005276_010--Hb_000164_140 Hb_029920_030 Hb_029920_030 Hb_005276_010--Hb_029920_030 Hb_016461_030 Hb_016461_030 Hb_005276_010--Hb_016461_030 Hb_005276_010--Hb_000816_200 Hb_000175_050 Hb_000175_050 Hb_000152_480--Hb_000175_050 Hb_005489_090 Hb_005489_090 Hb_000152_480--Hb_005489_090 Hb_000042_290 Hb_000042_290 Hb_000152_480--Hb_000042_290 Hb_000152_480--Hb_007426_170 Hb_000152_480--Hb_036790_120 Hb_025194_090 Hb_025194_090 Hb_003029_020--Hb_025194_090 Hb_003029_020--Hb_002075_030 Hb_002542_160 Hb_002542_160 Hb_003029_020--Hb_002542_160 Hb_003171_030 Hb_003171_030 Hb_003029_020--Hb_003171_030 Hb_001438_010 Hb_001438_010 Hb_003029_020--Hb_001438_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03431 1.39176 5.53492 2.32005 0.809312 1.93987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.25244 3.63125 0.878439 1.59687 11.4161

CAGE analysis