Hb_000164_140

Information

Type -
Description -
Location Contig164: 105252-111422
Sequence    

Annotation

kegg
ID rcu:RCOM_0180630
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002522817.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q02764
description 50S ribosomal protein L24, chloroplastic OS=Nicotiana tabacum GN=RPL24 PE=1 SV=1
trembl
ID B9S9Z8
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_0180630 PE=4 SV=1
Gene Ontology
ID GO:0005840
description dihydroflavonol-4-reductase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15061: 108785-111454 , PASA_asmbl_15062: 109820-110229 , PASA_asmbl_15063: 110790-111011
cDNA
(Sanger)
(ID:Location)		 012_K02.ab1: 108941-111454 , 015_H19.ab1: 109552-111416 , 017_F07.ab1: 108854-111454 , 021_D24.ab1: 108901-111454 , 030_B02.ab1: 108877-111454 , 033_P08.ab1: 108922-111454 , 046_K13.ab1: 108873-111454 , 052_G20.ab1: 108893-111454

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000164_140 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_005725_220 0.0826089002 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
3 Hb_005276_010 0.0867504567 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
4 Hb_002078_300 0.0933352818 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
5 Hb_005846_030 0.0955897538 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
6 Hb_029920_030 0.0957343945 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
7 Hb_000028_110 0.1055194124 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
8 Hb_002685_060 0.1056434395 - - 30S ribosomal protein S5, putative [Ricinus communis]
9 Hb_001946_160 0.1072737017 - - putative chaperon P13.9 [Castanea sativa]
10 Hb_000110_230 0.1089983503 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
11 Hb_000816_200 0.1092698367 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
12 Hb_003777_020 0.1092759065 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
13 Hb_016461_030 0.1115926563 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000059_270 0.1133092241 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
15 Hb_001898_180 0.1162452562 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
16 Hb_000112_060 0.1187124685 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
17 Hb_003813_020 0.122024184 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
18 Hb_000983_070 0.1223548664 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007534_050 0.1230471766 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_009767_130 0.1238767526 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]

Gene co-expression network

sample Hb_000164_140 Hb_000164_140 Hb_005725_220 Hb_005725_220 Hb_000164_140--Hb_005725_220 Hb_005276_010 Hb_005276_010 Hb_000164_140--Hb_005276_010 Hb_002078_300 Hb_002078_300 Hb_000164_140--Hb_002078_300 Hb_005846_030 Hb_005846_030 Hb_000164_140--Hb_005846_030 Hb_029920_030 Hb_029920_030 Hb_000164_140--Hb_029920_030 Hb_000028_110 Hb_000028_110 Hb_000164_140--Hb_000028_110 Hb_001124_180 Hb_001124_180 Hb_005725_220--Hb_001124_180 Hb_005725_220--Hb_005846_030 Hb_005725_220--Hb_002078_300 Hb_005489_090 Hb_005489_090 Hb_005725_220--Hb_005489_090 Hb_005725_220--Hb_029920_030 Hb_001946_160 Hb_001946_160 Hb_005276_010--Hb_001946_160 Hb_000941_100 Hb_000941_100 Hb_005276_010--Hb_000941_100 Hb_005276_010--Hb_029920_030 Hb_016461_030 Hb_016461_030 Hb_005276_010--Hb_016461_030 Hb_000816_200 Hb_000816_200 Hb_005276_010--Hb_000816_200 Hb_004109_160 Hb_004109_160 Hb_002078_300--Hb_004109_160 Hb_002078_300--Hb_005846_030 Hb_001792_030 Hb_001792_030 Hb_002078_300--Hb_001792_030 Hb_003941_030 Hb_003941_030 Hb_002078_300--Hb_003941_030 Hb_007632_170 Hb_007632_170 Hb_005846_030--Hb_007632_170 Hb_001712_020 Hb_001712_020 Hb_005846_030--Hb_001712_020 Hb_000638_160 Hb_000638_160 Hb_005846_030--Hb_000638_160 Hb_000167_050 Hb_000167_050 Hb_005846_030--Hb_000167_050 Hb_029920_030--Hb_000816_200 Hb_029920_030--Hb_016461_030 Hb_001195_770 Hb_001195_770 Hb_029920_030--Hb_001195_770 Hb_000480_040 Hb_000480_040 Hb_029920_030--Hb_000480_040 Hb_000107_570 Hb_000107_570 Hb_000028_110--Hb_000107_570 Hb_158845_050 Hb_158845_050 Hb_000028_110--Hb_158845_050 Hb_002304_080 Hb_002304_080 Hb_000028_110--Hb_002304_080 Hb_006538_120 Hb_006538_120 Hb_000028_110--Hb_006538_120 Hb_093458_060 Hb_093458_060 Hb_000028_110--Hb_093458_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.22458 5.6822 27.4333 18.6546 8.44572 12.0203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.2123 22.3576 13.2131 8.72937 70.6913

CAGE analysis