Hb_093458_060

Information

Type -
Description -
Location Contig93458: 79346-84734
Sequence    

Annotation

kegg
ID rcu:RCOM_1020340
description hypothetical protein
nr
ID XP_012071164.1
description PREDICTED: uncharacterized protein LOC105633194 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KT40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01143 PE=4 SV=1
Gene Ontology
ID GO:0009508
description plastid transcriptionally active isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62968: 80423-84513
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093458_060 0.0 - - PREDICTED: uncharacterized protein LOC105633194 [Jatropha curcas]
2 Hb_000345_370 0.1028101522 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
3 Hb_007769_040 0.1052743035 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
4 Hb_003777_020 0.1056082301 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
5 Hb_000028_110 0.1100173171 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
6 Hb_002282_070 0.1100788394 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
7 Hb_001623_130 0.1129876034 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_002217_260 0.1144249573 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
9 Hb_000130_260 0.1179815143 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X1 [Jatropha curcas]
10 Hb_006538_120 0.1194444124 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
11 Hb_001427_040 0.1195932434 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
12 Hb_000220_210 0.1212716663 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
13 Hb_009775_010 0.1218144724 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
14 Hb_002685_060 0.1226463177 - - 30S ribosomal protein S5, putative [Ricinus communis]
15 Hb_000144_060 0.123867725 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_002053_110 0.1239742798 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_001660_120 0.1254132398 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
18 Hb_158845_050 0.1273149756 - - PREDICTED: uncharacterized protein LOC105122890 [Populus euphratica]
19 Hb_002542_160 0.1278950311 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
20 Hb_000462_090 0.1282790853 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_093458_060 Hb_093458_060 Hb_000345_370 Hb_000345_370 Hb_093458_060--Hb_000345_370 Hb_007769_040 Hb_007769_040 Hb_093458_060--Hb_007769_040 Hb_003777_020 Hb_003777_020 Hb_093458_060--Hb_003777_020 Hb_000028_110 Hb_000028_110 Hb_093458_060--Hb_000028_110 Hb_002282_070 Hb_002282_070 Hb_093458_060--Hb_002282_070 Hb_001623_130 Hb_001623_130 Hb_093458_060--Hb_001623_130 Hb_000144_060 Hb_000144_060 Hb_000345_370--Hb_000144_060 Hb_000345_370--Hb_002282_070 Hb_002542_160 Hb_002542_160 Hb_000345_370--Hb_002542_160 Hb_000220_210 Hb_000220_210 Hb_000345_370--Hb_000220_210 Hb_000309_020 Hb_000309_020 Hb_000345_370--Hb_000309_020 Hb_016461_030 Hb_016461_030 Hb_000345_370--Hb_016461_030 Hb_025477_050 Hb_025477_050 Hb_007769_040--Hb_025477_050 Hb_000589_110 Hb_000589_110 Hb_007769_040--Hb_000589_110 Hb_007769_040--Hb_000345_370 Hb_000479_170 Hb_000479_170 Hb_007769_040--Hb_000479_170 Hb_013405_080 Hb_013405_080 Hb_007769_040--Hb_013405_080 Hb_001220_050 Hb_001220_050 Hb_007769_040--Hb_001220_050 Hb_003777_020--Hb_002282_070 Hb_002685_060 Hb_002685_060 Hb_003777_020--Hb_002685_060 Hb_003777_020--Hb_016461_030 Hb_000661_090 Hb_000661_090 Hb_003777_020--Hb_000661_090 Hb_003777_020--Hb_000345_370 Hb_001427_040 Hb_001427_040 Hb_003777_020--Hb_001427_040 Hb_000107_570 Hb_000107_570 Hb_000028_110--Hb_000107_570 Hb_158845_050 Hb_158845_050 Hb_000028_110--Hb_158845_050 Hb_002304_080 Hb_002304_080 Hb_000028_110--Hb_002304_080 Hb_000164_140 Hb_000164_140 Hb_000028_110--Hb_000164_140 Hb_006538_120 Hb_006538_120 Hb_000028_110--Hb_006538_120 Hb_002282_070--Hb_001427_040 Hb_002282_070--Hb_016461_030 Hb_002282_070--Hb_002685_060 Hb_002282_070--Hb_000144_060 Hb_000613_120 Hb_000613_120 Hb_001623_130--Hb_000613_120 Hb_001623_130--Hb_000220_210 Hb_003752_070 Hb_003752_070 Hb_001623_130--Hb_003752_070 Hb_006787_090 Hb_006787_090 Hb_001623_130--Hb_006787_090 Hb_001623_130--Hb_002542_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.29908 1.74554 4.33789 1.99231 3.72237 2.82412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.96818 3.31249 1.52503 1.22621 10.7514

CAGE analysis