Hb_002282_070

Information

Type -
Description -
Location Contig2282: 129817-136251
Sequence    

Annotation

kegg
ID pop:POPTR_0009s10390g
description POPTRDRAFT_1087090; hypothetical protein
nr
ID XP_012066864.1
description PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
swissprot
ID Q8VY09
description Protein DJ-1 homolog C OS=Arabidopsis thaliana GN=DJ1C PE=2 SV=1
trembl
ID A0A067LCR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01594 PE=4 SV=1
Gene Ontology
ID GO:0016740
description protein dj-1 homolog c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23781: 129880-130674 , PASA_asmbl_23782: 132230-136036
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002282_070 0.0 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
2 Hb_001427_040 0.0577864004 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
3 Hb_016461_030 0.0612862576 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_000345_370 0.0640764716 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
5 Hb_003777_020 0.0657131302 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
6 Hb_002685_060 0.0805126532 - - 30S ribosomal protein S5, putative [Ricinus communis]
7 Hb_000144_060 0.0853293367 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_002542_160 0.0855619595 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
9 Hb_003475_020 0.0881868221 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
10 Hb_000220_210 0.0891918647 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
11 Hb_000309_020 0.0929289113 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
12 Hb_002660_190 0.0929488231 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
13 Hb_025477_050 0.0951400558 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_000661_090 0.0959971643 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
15 Hb_007769_040 0.1013424811 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_004108_060 0.1024286557 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
17 Hb_001080_070 0.1042836537 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
18 Hb_001472_160 0.1064101044 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
19 Hb_000069_490 0.1080181524 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011861_050 0.10842205 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002282_070 Hb_002282_070 Hb_001427_040 Hb_001427_040 Hb_002282_070--Hb_001427_040 Hb_016461_030 Hb_016461_030 Hb_002282_070--Hb_016461_030 Hb_000345_370 Hb_000345_370 Hb_002282_070--Hb_000345_370 Hb_003777_020 Hb_003777_020 Hb_002282_070--Hb_003777_020 Hb_002685_060 Hb_002685_060 Hb_002282_070--Hb_002685_060 Hb_000144_060 Hb_000144_060 Hb_002282_070--Hb_000144_060 Hb_000220_210 Hb_000220_210 Hb_001427_040--Hb_000220_210 Hb_001427_040--Hb_016461_030 Hb_002542_160 Hb_002542_160 Hb_001427_040--Hb_002542_160 Hb_001427_040--Hb_000345_370 Hb_002660_190 Hb_002660_190 Hb_001427_040--Hb_002660_190 Hb_000816_200 Hb_000816_200 Hb_016461_030--Hb_000816_200 Hb_016461_030--Hb_000345_370 Hb_016461_030--Hb_003777_020 Hb_016461_030--Hb_002542_160 Hb_000345_370--Hb_000144_060 Hb_000345_370--Hb_002542_160 Hb_000345_370--Hb_000220_210 Hb_000309_020 Hb_000309_020 Hb_000345_370--Hb_000309_020 Hb_003777_020--Hb_002685_060 Hb_000661_090 Hb_000661_090 Hb_003777_020--Hb_000661_090 Hb_003777_020--Hb_000345_370 Hb_003777_020--Hb_001427_040 Hb_002685_060--Hb_016461_030 Hb_007054_070 Hb_007054_070 Hb_002685_060--Hb_007054_070 Hb_002685_060--Hb_000661_090 Hb_005276_010 Hb_005276_010 Hb_002685_060--Hb_005276_010 Hb_000144_060--Hb_000309_020 Hb_011861_050 Hb_011861_050 Hb_000144_060--Hb_011861_050 Hb_025477_050 Hb_025477_050 Hb_000144_060--Hb_025477_050 Hb_000144_060--Hb_002542_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.44671 2.96547 6.65146 3.79544 3.75127 4.05775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.65108 3.19968 2.82854 3.99695 19.1528

CAGE analysis