Hb_000107_570

Information

Type -
Description -
Location Contig107: 431970-437966
Sequence    

Annotation

kegg
ID tcc:TCM_010837
description Uncharacterized protein isoform 1
nr
ID XP_012072195.1
description PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
swissprot
ID P08452
description Uncharacterized lipoprotein syc1174_c OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1174_c PE=3 SV=2
trembl
ID A0A067KSQ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04681 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02212: 431975-436472 , PASA_asmbl_02213: 436529-437951
cDNA
(Sanger)
(ID:Location)		 021_H21.ab1: 431975-434745

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_570 0.0 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
2 Hb_000028_110 0.0741023848 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
3 Hb_000622_240 0.1138766009 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
4 Hb_000462_090 0.1146372258 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
5 Hb_003666_030 0.1190652347 - - Thiol:disulfide interchange protein txlA, putative [Ricinus communis]
6 Hb_000702_080 0.1246059097 - - PREDICTED: uncharacterized protein LOC105630492 [Jatropha curcas]
7 Hb_006117_040 0.1252189028 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
8 Hb_002304_080 0.1265539244 - - PREDICTED: uncharacterized protein LOC105649626 [Jatropha curcas]
9 Hb_093458_060 0.1290261163 - - PREDICTED: uncharacterized protein LOC105633194 [Jatropha curcas]
10 Hb_158845_050 0.1297482011 - - PREDICTED: uncharacterized protein LOC105122890 [Populus euphratica]
11 Hb_001439_060 0.1304403652 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
12 Hb_004241_020 0.1311931181 - - PREDICTED: DAG protein, chloroplastic-like [Jatropha curcas]
13 Hb_005731_160 0.1335204792 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_001951_180 0.1339913167 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_000120_290 0.1345428997 - - PREDICTED: N-acylphosphatidylethanolamine synthase isoform X1 [Jatropha curcas]
16 Hb_006538_120 0.1346005639 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
17 Hb_002811_130 0.1367907368 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
18 Hb_002217_260 0.138962126 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
19 Hb_001584_200 0.1394318128 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
20 Hb_000928_010 0.1406295474 - - Cell division protein ftsZ, putative [Ricinus communis]

Gene co-expression network

sample Hb_000107_570 Hb_000107_570 Hb_000028_110 Hb_000028_110 Hb_000107_570--Hb_000028_110 Hb_000622_240 Hb_000622_240 Hb_000107_570--Hb_000622_240 Hb_000462_090 Hb_000462_090 Hb_000107_570--Hb_000462_090 Hb_003666_030 Hb_003666_030 Hb_000107_570--Hb_003666_030 Hb_000702_080 Hb_000702_080 Hb_000107_570--Hb_000702_080 Hb_006117_040 Hb_006117_040 Hb_000107_570--Hb_006117_040 Hb_158845_050 Hb_158845_050 Hb_000028_110--Hb_158845_050 Hb_002304_080 Hb_002304_080 Hb_000028_110--Hb_002304_080 Hb_000164_140 Hb_000164_140 Hb_000028_110--Hb_000164_140 Hb_006538_120 Hb_006538_120 Hb_000028_110--Hb_006538_120 Hb_093458_060 Hb_093458_060 Hb_000028_110--Hb_093458_060 Hb_000622_240--Hb_000028_110 Hb_005846_030 Hb_005846_030 Hb_000622_240--Hb_005846_030 Hb_000638_160 Hb_000638_160 Hb_000622_240--Hb_000638_160 Hb_001435_020 Hb_001435_020 Hb_000622_240--Hb_001435_020 Hb_000622_240--Hb_000164_140 Hb_001584_200 Hb_001584_200 Hb_000462_090--Hb_001584_200 Hb_000173_250 Hb_000173_250 Hb_000462_090--Hb_000173_250 Hb_000340_150 Hb_000340_150 Hb_000462_090--Hb_000340_150 Hb_000172_580 Hb_000172_580 Hb_000462_090--Hb_000172_580 Hb_009775_010 Hb_009775_010 Hb_000462_090--Hb_009775_010 Hb_003376_230 Hb_003376_230 Hb_000462_090--Hb_003376_230 Hb_001427_200 Hb_001427_200 Hb_003666_030--Hb_001427_200 Hb_002811_130 Hb_002811_130 Hb_003666_030--Hb_002811_130 Hb_021576_030 Hb_021576_030 Hb_003666_030--Hb_021576_030 Hb_003666_030--Hb_006117_040 Hb_012675_050 Hb_012675_050 Hb_003666_030--Hb_012675_050 Hb_004241_020 Hb_004241_020 Hb_000702_080--Hb_004241_020 Hb_005237_050 Hb_005237_050 Hb_000702_080--Hb_005237_050 Hb_002217_260 Hb_002217_260 Hb_000702_080--Hb_002217_260 Hb_000130_260 Hb_000130_260 Hb_000702_080--Hb_000130_260 Hb_000297_150 Hb_000297_150 Hb_000702_080--Hb_000297_150 Hb_002163_040 Hb_002163_040 Hb_006117_040--Hb_002163_040 Hb_000080_120 Hb_000080_120 Hb_006117_040--Hb_000080_120 Hb_002893_070 Hb_002893_070 Hb_006117_040--Hb_002893_070 Hb_021346_030 Hb_021346_030 Hb_006117_040--Hb_021346_030 Hb_000224_160 Hb_000224_160 Hb_006117_040--Hb_000224_160 Hb_000134_310 Hb_000134_310 Hb_006117_040--Hb_000134_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04995 0.439379 1.51696 0.731534 1.26821 1.36258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.44215 2.103 0.973741 0.80889 4.39052

CAGE analysis