Hb_003666_030

Information

Type -
Description -
Location Contig3666: 63772-66216
Sequence    

Annotation

kegg
ID rcu:RCOM_0603680
description Thiol:disulfide interchange protein txlA, putative
nr
ID XP_002522379.1
description Thiol:disulfide interchange protein txlA, putative [Ricinus communis]
swissprot
ID Q7Y0D4
description Thioredoxin-like protein HCF164, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0767500 PE=2 SV=1
trembl
ID B9S8R0
description Thiol:disulfide interchange protein txlA, putative OS=Ricinus communis GN=RCOM_0603680 PE=4 SV=1
Gene Ontology
ID GO:0009534
description thioredoxin-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37708: 63774-65828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003666_030 0.0 - - Thiol:disulfide interchange protein txlA, putative [Ricinus communis]
2 Hb_001427_200 0.1157114792 - - PREDICTED: uncharacterized protein LOC105637796 [Jatropha curcas]
3 Hb_002811_130 0.1175845809 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
4 Hb_000107_570 0.1190652347 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
5 Hb_021576_030 0.1286180424 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
6 Hb_006117_040 0.1289377899 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
7 Hb_012675_050 0.1322147277 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004330_090 0.1341908698 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
9 Hb_004125_040 0.1350474352 - - -
10 Hb_004837_030 0.1385841156 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
11 Hb_002163_040 0.1395938389 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005847_060 0.1402528412 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
13 Hb_003077_020 0.1409260332 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_001318_260 0.1424620188 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
15 Hb_000061_210 0.1427287717 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
16 Hb_018133_090 0.1444215861 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000227_170 0.1444758631 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_007163_070 0.1446660845 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
19 Hb_011716_130 0.1468682952 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
20 Hb_004871_040 0.1471405272 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_003666_030 Hb_003666_030 Hb_001427_200 Hb_001427_200 Hb_003666_030--Hb_001427_200 Hb_002811_130 Hb_002811_130 Hb_003666_030--Hb_002811_130 Hb_000107_570 Hb_000107_570 Hb_003666_030--Hb_000107_570 Hb_021576_030 Hb_021576_030 Hb_003666_030--Hb_021576_030 Hb_006117_040 Hb_006117_040 Hb_003666_030--Hb_006117_040 Hb_012675_050 Hb_012675_050 Hb_003666_030--Hb_012675_050 Hb_001268_420 Hb_001268_420 Hb_001427_200--Hb_001268_420 Hb_003683_120 Hb_003683_120 Hb_001427_200--Hb_003683_120 Hb_032264_070 Hb_032264_070 Hb_001427_200--Hb_032264_070 Hb_004195_270 Hb_004195_270 Hb_001427_200--Hb_004195_270 Hb_001105_030 Hb_001105_030 Hb_001427_200--Hb_001105_030 Hb_001427_200--Hb_012675_050 Hb_000289_110 Hb_000289_110 Hb_002811_130--Hb_000289_110 Hb_011716_130 Hb_011716_130 Hb_002811_130--Hb_011716_130 Hb_002014_030 Hb_002014_030 Hb_002811_130--Hb_002014_030 Hb_005847_060 Hb_005847_060 Hb_002811_130--Hb_005847_060 Hb_006274_030 Hb_006274_030 Hb_002811_130--Hb_006274_030 Hb_000061_210 Hb_000061_210 Hb_002811_130--Hb_000061_210 Hb_000028_110 Hb_000028_110 Hb_000107_570--Hb_000028_110 Hb_000622_240 Hb_000622_240 Hb_000107_570--Hb_000622_240 Hb_000462_090 Hb_000462_090 Hb_000107_570--Hb_000462_090 Hb_000702_080 Hb_000702_080 Hb_000107_570--Hb_000702_080 Hb_000107_570--Hb_006117_040 Hb_004125_040 Hb_004125_040 Hb_021576_030--Hb_004125_040 Hb_087749_010 Hb_087749_010 Hb_021576_030--Hb_087749_010 Hb_001491_010 Hb_001491_010 Hb_021576_030--Hb_001491_010 Hb_021576_030--Hb_005847_060 Hb_002613_020 Hb_002613_020 Hb_021576_030--Hb_002613_020 Hb_004871_040 Hb_004871_040 Hb_021576_030--Hb_004871_040 Hb_002163_040 Hb_002163_040 Hb_006117_040--Hb_002163_040 Hb_000080_120 Hb_000080_120 Hb_006117_040--Hb_000080_120 Hb_002893_070 Hb_002893_070 Hb_006117_040--Hb_002893_070 Hb_021346_030 Hb_021346_030 Hb_006117_040--Hb_021346_030 Hb_000224_160 Hb_000224_160 Hb_006117_040--Hb_000224_160 Hb_000134_310 Hb_000134_310 Hb_006117_040--Hb_000134_310 Hb_011909_100 Hb_011909_100 Hb_012675_050--Hb_011909_100 Hb_000107_160 Hb_000107_160 Hb_012675_050--Hb_000107_160 Hb_012675_050--Hb_000061_210 Hb_000046_050 Hb_000046_050 Hb_012675_050--Hb_000046_050 Hb_103118_010 Hb_103118_010 Hb_012675_050--Hb_103118_010 Hb_002408_020 Hb_002408_020 Hb_012675_050--Hb_002408_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.40088 5.28245 11.1007 6.94109 13.4177 10.7528
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2701 24.7223 8.38768 4.32932 23.3854

CAGE analysis