Hb_000622_240

Information

Type -
Description -
Location Contig622: 201335-203573
Sequence    

Annotation

kegg
ID rcu:RCOM_1617300
description Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor, putative
nr
ID XP_012083273.1
description PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
swissprot
ID O04616
description Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana GN=CURT1A PE=1 SV=1
trembl
ID A0A067K0D7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14304 PE=4 SV=1
Gene Ontology
ID GO:0009535
description protein curvature thylakoid chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51577: 201294-203475 , PASA_asmbl_51579: 201760-201984
cDNA
(Sanger)
(ID:Location)		 002_P24.ab1: 201340-203375 , 003_L22.ab1: 202281-203471 , 044_C08.ab1: 201344-203416

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_240 0.0 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
2 Hb_000107_570 0.1138766009 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
3 Hb_000028_110 0.1183366909 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
4 Hb_005846_030 0.1211898223 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
5 Hb_000638_160 0.1255718276 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
6 Hb_001435_020 0.126235494 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
7 Hb_000164_140 0.1268735816 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
8 Hb_001712_020 0.1269840619 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
9 Hb_001790_030 0.143924148 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]
10 Hb_007534_050 0.1453540677 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000300_660 0.1472307877 - - unknown [Glycine max]
12 Hb_014834_130 0.1496103453 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
13 Hb_003349_030 0.150404786 - - PREDICTED: uncharacterized protein LOC105628283 [Jatropha curcas]
14 Hb_003813_020 0.1541878327 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
15 Hb_000390_110 0.1579647876 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
16 Hb_001490_030 0.1587713551 - - PREDICTED: psbP domain-containing protein 6, chloroplastic [Jatropha curcas]
17 Hb_000462_090 0.1590390088 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
18 Hb_011689_120 0.1591506999 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
19 Hb_005725_220 0.1608490873 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
20 Hb_000788_020 0.1628119349 - - PREDICTED: uncharacterized protein LOC105629709 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000622_240 Hb_000622_240 Hb_000107_570 Hb_000107_570 Hb_000622_240--Hb_000107_570 Hb_000028_110 Hb_000028_110 Hb_000622_240--Hb_000028_110 Hb_005846_030 Hb_005846_030 Hb_000622_240--Hb_005846_030 Hb_000638_160 Hb_000638_160 Hb_000622_240--Hb_000638_160 Hb_001435_020 Hb_001435_020 Hb_000622_240--Hb_001435_020 Hb_000164_140 Hb_000164_140 Hb_000622_240--Hb_000164_140 Hb_000107_570--Hb_000028_110 Hb_000462_090 Hb_000462_090 Hb_000107_570--Hb_000462_090 Hb_003666_030 Hb_003666_030 Hb_000107_570--Hb_003666_030 Hb_000702_080 Hb_000702_080 Hb_000107_570--Hb_000702_080 Hb_006117_040 Hb_006117_040 Hb_000107_570--Hb_006117_040 Hb_158845_050 Hb_158845_050 Hb_000028_110--Hb_158845_050 Hb_002304_080 Hb_002304_080 Hb_000028_110--Hb_002304_080 Hb_000028_110--Hb_000164_140 Hb_006538_120 Hb_006538_120 Hb_000028_110--Hb_006538_120 Hb_093458_060 Hb_093458_060 Hb_000028_110--Hb_093458_060 Hb_007632_170 Hb_007632_170 Hb_005846_030--Hb_007632_170 Hb_005725_220 Hb_005725_220 Hb_005846_030--Hb_005725_220 Hb_001712_020 Hb_001712_020 Hb_005846_030--Hb_001712_020 Hb_005846_030--Hb_000164_140 Hb_005846_030--Hb_000638_160 Hb_000167_050 Hb_000167_050 Hb_005846_030--Hb_000167_050 Hb_000638_160--Hb_000167_050 Hb_014834_130 Hb_014834_130 Hb_000638_160--Hb_014834_130 Hb_011689_120 Hb_011689_120 Hb_000638_160--Hb_011689_120 Hb_000638_160--Hb_000462_090 Hb_003349_030 Hb_003349_030 Hb_001435_020--Hb_003349_030 Hb_001435_020--Hb_001712_020 Hb_001790_030 Hb_001790_030 Hb_001435_020--Hb_001790_030 Hb_001435_020--Hb_005846_030 Hb_000390_110 Hb_000390_110 Hb_001435_020--Hb_000390_110 Hb_000164_140--Hb_005725_220 Hb_005276_010 Hb_005276_010 Hb_000164_140--Hb_005276_010 Hb_002078_300 Hb_002078_300 Hb_000164_140--Hb_002078_300 Hb_029920_030 Hb_029920_030 Hb_000164_140--Hb_029920_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.7929 13.9106 188.758 123.315 82.8112 123.149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
327.463 277.517 139.094 67.3833 545.525

CAGE analysis