Hb_001790_030

Information

Type -
Description -
Location Contig1790: 27285-32491
Sequence    

Annotation

kegg
ID tcc:TCM_016810
description Ferredoxin thioredoxin reductase catalytic beta chain family protein isoform 1
nr
ID XP_012082288.1
description PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]
swissprot
ID Q9SJ89
description Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Arabidopsis thaliana GN=FTRC PE=2 SV=1
trembl
ID A0A061EJ31
description Ferredoxin thioredoxin reductase catalytic beta chain family protein isoform 1 OS=Theobroma cacao GN=TCM_016810 PE=4 SV=1
Gene Ontology
ID GO:0016730
description ferredoxin-thioredoxin reductase catalytic chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17306: 27279-32421
cDNA
(Sanger)
(ID:Location)		 008_N11.ab1: 27290-32421 , 025_G21.ab1: 27279-32448 , 025_O01.ab1: 27290-32408 , 053_K05.ab1: 27290-32421

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001790_030 0.0 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]
2 Hb_003813_020 0.1138370844 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
3 Hb_000984_240 0.1169664607 - - hypothetical protein JCGZ_15962 [Jatropha curcas]
4 Hb_003349_030 0.120150764 - - PREDICTED: uncharacterized protein LOC105628283 [Jatropha curcas]
5 Hb_005846_030 0.1261533331 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
6 Hb_001712_020 0.130278359 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
7 Hb_000254_140 0.1324800086 - - PREDICTED: 30S ribosomal protein S17, chloroplastic [Jatropha curcas]
8 Hb_003666_040 0.1325549018 - - PREDICTED: uncharacterized protein LOC105639624 [Jatropha curcas]
9 Hb_000164_140 0.141041941 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
10 Hb_000176_010 0.1413977309 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
11 Hb_007534_050 0.1427502022 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_007632_170 0.1427610252 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
13 Hb_000167_050 0.1439156697 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
14 Hb_000622_240 0.143924148 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
15 Hb_002053_010 0.1459954115 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
16 Hb_000877_080 0.1469772367 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
17 Hb_000627_300 0.1474207363 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
18 Hb_001898_180 0.1496184384 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
19 Hb_055619_010 0.1511841877 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
20 Hb_000394_180 0.152495437 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]

Gene co-expression network

sample Hb_001790_030 Hb_001790_030 Hb_003813_020 Hb_003813_020 Hb_001790_030--Hb_003813_020 Hb_000984_240 Hb_000984_240 Hb_001790_030--Hb_000984_240 Hb_003349_030 Hb_003349_030 Hb_001790_030--Hb_003349_030 Hb_005846_030 Hb_005846_030 Hb_001790_030--Hb_005846_030 Hb_001712_020 Hb_001712_020 Hb_001790_030--Hb_001712_020 Hb_000254_140 Hb_000254_140 Hb_001790_030--Hb_000254_140 Hb_007534_050 Hb_007534_050 Hb_003813_020--Hb_007534_050 Hb_000112_060 Hb_000112_060 Hb_003813_020--Hb_000112_060 Hb_000164_140 Hb_000164_140 Hb_003813_020--Hb_000164_140 Hb_001946_160 Hb_001946_160 Hb_003813_020--Hb_001946_160 Hb_158845_050 Hb_158845_050 Hb_003813_020--Hb_158845_050 Hb_000167_050 Hb_000167_050 Hb_000984_240--Hb_000167_050 Hb_000120_770 Hb_000120_770 Hb_000984_240--Hb_000120_770 Hb_000984_240--Hb_000254_140 Hb_000394_180 Hb_000394_180 Hb_000984_240--Hb_000394_180 Hb_000984_240--Hb_003349_030 Hb_000877_080 Hb_000877_080 Hb_003349_030--Hb_000877_080 Hb_000056_070 Hb_000056_070 Hb_003349_030--Hb_000056_070 Hb_003050_250 Hb_003050_250 Hb_003349_030--Hb_003050_250 Hb_003349_030--Hb_001712_020 Hb_001019_150 Hb_001019_150 Hb_003349_030--Hb_001019_150 Hb_007632_170 Hb_007632_170 Hb_005846_030--Hb_007632_170 Hb_005725_220 Hb_005725_220 Hb_005846_030--Hb_005725_220 Hb_005846_030--Hb_001712_020 Hb_005846_030--Hb_000164_140 Hb_000638_160 Hb_000638_160 Hb_005846_030--Hb_000638_160 Hb_005846_030--Hb_000167_050 Hb_001712_020--Hb_000877_080 Hb_011689_120 Hb_011689_120 Hb_001712_020--Hb_011689_120 Hb_006846_150 Hb_006846_150 Hb_001712_020--Hb_006846_150 Hb_014834_130 Hb_014834_130 Hb_001712_020--Hb_014834_130 Hb_000317_260 Hb_000317_260 Hb_001712_020--Hb_000317_260 Hb_004109_160 Hb_004109_160 Hb_000254_140--Hb_004109_160 Hb_000723_290 Hb_000723_290 Hb_000254_140--Hb_000723_290 Hb_000254_140--Hb_007632_170 Hb_020378_060 Hb_020378_060 Hb_000254_140--Hb_020378_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0972 8.65823 63.7603 64.4165 14.4567 31.533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.3144 83.7955 18.1284 19.4939 124.897

CAGE analysis