Hb_003050_250

Information

Type -
Description -
Location Contig3050: 206161-208605
Sequence    

Annotation

kegg
ID tcc:TCM_029511
description NAD(P)-binding Rossmann-fold superfamily protein
nr
ID XP_012072089.1
description PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
swissprot
ID Q8H124
description Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana GN=At2g34460 PE=2 SV=1
trembl
ID A0A067L0D6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04598 PE=4 SV=1
Gene Ontology
ID GO:0009535
description nad -binding rossmann-fold superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32154: 206164-208505 , PASA_asmbl_32157: 209442-214897
cDNA
(Sanger)
(ID:Location)		 011_A18.ab1: 206719-208447 , 047_G04.ab1: 206656-208505

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_250 0.0 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
2 Hb_019113_020 0.067794555 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
3 Hb_004125_040 0.0696276108 - - -
4 Hb_001575_060 0.080244693 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
5 Hb_001240_010 0.0917441774 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
6 Hb_001728_060 0.0923291388 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
7 Hb_000403_070 0.0926517813 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_161175_010 0.1025260148 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
9 Hb_000617_200 0.1057894349 - - f-actin capping protein alpha, putative [Ricinus communis]
10 Hb_003050_280 0.1072157561 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
11 Hb_000853_190 0.114438013 - - mitochondrial carrier protein, putative [Ricinus communis]
12 Hb_021576_030 0.1172286625 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
13 Hb_002609_200 0.1186823961 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_001491_010 0.1191838912 - - PREDICTED: uncharacterized protein LOC105649805 [Jatropha curcas]
15 Hb_000056_070 0.1203703698 - - -
16 Hb_000318_160 0.121095624 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
17 Hb_002872_050 0.1224010483 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
18 Hb_002503_020 0.1227128883 - - Phosphatase 2C family protein, putative [Theobroma cacao]
19 Hb_011457_050 0.1230920043 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
20 Hb_011689_120 0.123847689 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]

Gene co-expression network

sample Hb_003050_250 Hb_003050_250 Hb_019113_020 Hb_019113_020 Hb_003050_250--Hb_019113_020 Hb_004125_040 Hb_004125_040 Hb_003050_250--Hb_004125_040 Hb_001575_060 Hb_001575_060 Hb_003050_250--Hb_001575_060 Hb_001240_010 Hb_001240_010 Hb_003050_250--Hb_001240_010 Hb_001728_060 Hb_001728_060 Hb_003050_250--Hb_001728_060 Hb_000403_070 Hb_000403_070 Hb_003050_250--Hb_000403_070 Hb_161175_010 Hb_161175_010 Hb_019113_020--Hb_161175_010 Hb_002503_020 Hb_002503_020 Hb_019113_020--Hb_002503_020 Hb_000125_210 Hb_000125_210 Hb_019113_020--Hb_000125_210 Hb_019113_020--Hb_004125_040 Hb_000318_160 Hb_000318_160 Hb_019113_020--Hb_000318_160 Hb_003050_280 Hb_003050_280 Hb_004125_040--Hb_003050_280 Hb_001491_010 Hb_001491_010 Hb_004125_040--Hb_001491_010 Hb_021576_030 Hb_021576_030 Hb_004125_040--Hb_021576_030 Hb_007576_170 Hb_007576_170 Hb_004125_040--Hb_007576_170 Hb_001575_060--Hb_000403_070 Hb_001575_060--Hb_001728_060 Hb_001575_060--Hb_001240_010 Hb_000107_150 Hb_000107_150 Hb_001575_060--Hb_000107_150 Hb_001892_070 Hb_001892_070 Hb_001575_060--Hb_001892_070 Hb_001240_010--Hb_000403_070 Hb_001240_010--Hb_000107_150 Hb_140627_010 Hb_140627_010 Hb_001240_010--Hb_140627_010 Hb_011457_050 Hb_011457_050 Hb_001240_010--Hb_011457_050 Hb_000159_130 Hb_000159_130 Hb_001728_060--Hb_000159_130 Hb_000016_080 Hb_000016_080 Hb_001728_060--Hb_000016_080 Hb_001006_020 Hb_001006_020 Hb_001728_060--Hb_001006_020 Hb_001728_060--Hb_000107_150 Hb_001728_060--Hb_011457_050 Hb_006846_150 Hb_006846_150 Hb_000403_070--Hb_006846_150 Hb_000403_070--Hb_140627_010 Hb_000465_070 Hb_000465_070 Hb_000403_070--Hb_000465_070 Hb_000457_290 Hb_000457_290 Hb_000403_070--Hb_000457_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.89888 4.75679 20.6515 28.0092 13.2279 20.1849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.9328 56.8443 39.3164 13.3429 46.6818

CAGE analysis