Hb_021576_030

Information

Type -
Description -
Location Contig21576: 11887-13784
Sequence    

Annotation

kegg
ID rcu:RCOM_0920810
description hypothetical protein
nr
ID XP_012076412.1
description PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07075 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22309: 12453-14276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021576_030 0.0 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
2 Hb_004125_040 0.0816970797 - - -
3 Hb_087749_010 0.0970470756 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
4 Hb_001491_010 0.1011379495 - - PREDICTED: uncharacterized protein LOC105649805 [Jatropha curcas]
5 Hb_005847_060 0.1016095058 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
6 Hb_002613_020 0.1019937038 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
7 Hb_004871_040 0.1043647612 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Jatropha curcas]
8 Hb_007576_170 0.1053524311 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000431_070 0.1055437017 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
10 Hb_002811_130 0.1076569641 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
11 Hb_002872_050 0.108488441 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
12 Hb_001728_060 0.1086066844 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
13 Hb_000107_150 0.1094824382 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
14 Hb_011716_130 0.1108209948 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
15 Hb_027459_020 0.1115043101 - - phosphoglycerate mutase, putative [Ricinus communis]
16 Hb_001240_010 0.1115314504 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
17 Hb_002540_080 0.1130039754 - - cysteine-type peptidase, putative [Ricinus communis]
18 Hb_001318_260 0.1141118696 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
19 Hb_001427_200 0.1167469646 - - PREDICTED: uncharacterized protein LOC105637796 [Jatropha curcas]
20 Hb_003050_250 0.1172286625 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_021576_030 Hb_021576_030 Hb_004125_040 Hb_004125_040 Hb_021576_030--Hb_004125_040 Hb_087749_010 Hb_087749_010 Hb_021576_030--Hb_087749_010 Hb_001491_010 Hb_001491_010 Hb_021576_030--Hb_001491_010 Hb_005847_060 Hb_005847_060 Hb_021576_030--Hb_005847_060 Hb_002613_020 Hb_002613_020 Hb_021576_030--Hb_002613_020 Hb_004871_040 Hb_004871_040 Hb_021576_030--Hb_004871_040 Hb_003050_250 Hb_003050_250 Hb_004125_040--Hb_003050_250 Hb_003050_280 Hb_003050_280 Hb_004125_040--Hb_003050_280 Hb_004125_040--Hb_001491_010 Hb_019113_020 Hb_019113_020 Hb_004125_040--Hb_019113_020 Hb_007576_170 Hb_007576_170 Hb_004125_040--Hb_007576_170 Hb_000431_070 Hb_000431_070 Hb_087749_010--Hb_000431_070 Hb_087749_010--Hb_002613_020 Hb_002798_020 Hb_002798_020 Hb_087749_010--Hb_002798_020 Hb_007065_010 Hb_007065_010 Hb_087749_010--Hb_007065_010 Hb_003025_040 Hb_003025_040 Hb_087749_010--Hb_003025_040 Hb_033153_060 Hb_033153_060 Hb_087749_010--Hb_033153_060 Hb_138585_050 Hb_138585_050 Hb_001491_010--Hb_138585_050 Hb_000210_220 Hb_000210_220 Hb_001491_010--Hb_000210_220 Hb_001439_060 Hb_001439_060 Hb_001491_010--Hb_001439_060 Hb_008554_070 Hb_008554_070 Hb_001491_010--Hb_008554_070 Hb_011716_130 Hb_011716_130 Hb_005847_060--Hb_011716_130 Hb_001662_150 Hb_001662_150 Hb_005847_060--Hb_001662_150 Hb_001922_170 Hb_001922_170 Hb_005847_060--Hb_001922_170 Hb_002811_130 Hb_002811_130 Hb_005847_060--Hb_002811_130 Hb_001157_020 Hb_001157_020 Hb_005847_060--Hb_001157_020 Hb_001579_270 Hb_001579_270 Hb_005847_060--Hb_001579_270 Hb_002613_020--Hb_000431_070 Hb_002613_020--Hb_007065_010 Hb_000016_080 Hb_000016_080 Hb_002613_020--Hb_000016_080 Hb_002613_020--Hb_007576_170 Hb_002613_020--Hb_033153_060 Hb_001117_090 Hb_001117_090 Hb_004871_040--Hb_001117_090 Hb_004871_040--Hb_002798_020 Hb_009421_040 Hb_009421_040 Hb_004871_040--Hb_009421_040 Hb_004800_120 Hb_004800_120 Hb_004871_040--Hb_004800_120 Hb_003581_100 Hb_003581_100 Hb_004871_040--Hb_003581_100 Hb_004871_040--Hb_087749_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.45107 0.676572 4.78284 3.64569 3.15238 5.17397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.73366 10.7633 4.56865 3.46925 7.99934

CAGE analysis