Hb_000210_220

Information

Type -
Description -
Location Contig210: 262027-264250
Sequence    

Annotation

kegg
ID rcu:RCOM_0437760
description (Di)nucleoside polyphosphate hydrolase, putative
nr
ID XP_006381950.1
description hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
swissprot
ID Q9FNH4
description Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana GN=NUDT27 PE=1 SV=1
trembl
ID U5GE86
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s22010g PE=3 SV=1
Gene Ontology
ID GO:0016787
description nudix hydrolase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21753: 261650-261751 , PASA_asmbl_21754: 261854-262426 , PASA_asmbl_21755: 263104-264215 , PASA_asmbl_21756: 263337-263808
cDNA
(Sanger)
(ID:Location)		 019_N12.ab1: 263282-264215

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_220 0.0 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
2 Hb_138585_050 0.0996651181 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
3 Hb_001083_020 0.1085987092 - - -
4 Hb_001491_010 0.1113545675 - - PREDICTED: uncharacterized protein LOC105649805 [Jatropha curcas]
5 Hb_003349_080 0.1124112237 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
6 Hb_061802_010 0.1161715657 - - hypothetical protein VITISV_011986 [Vitis vinifera]
7 Hb_000979_200 0.1167919564 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
8 Hb_000320_180 0.118148171 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
9 Hb_000680_140 0.1198096456 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
10 Hb_009393_210 0.1213724255 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
11 Hb_028486_030 0.1227965506 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
12 Hb_001775_110 0.1235047744 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
13 Hb_011909_100 0.1242410866 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000318_160 0.1266132395 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
15 Hb_017948_010 0.1267869691 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
16 Hb_000962_040 0.1271291682 - - heat shock protein binding protein, putative [Ricinus communis]
17 Hb_028487_030 0.1296015734 - - conserved hypothetical protein [Ricinus communis]
18 Hb_178968_130 0.1297101933 - - unknown [Populus trichocarpa x Populus deltoides]
19 Hb_001218_040 0.1312055366 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
20 Hb_002027_210 0.1325861002 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000210_220 Hb_000210_220 Hb_138585_050 Hb_138585_050 Hb_000210_220--Hb_138585_050 Hb_001083_020 Hb_001083_020 Hb_000210_220--Hb_001083_020 Hb_001491_010 Hb_001491_010 Hb_000210_220--Hb_001491_010 Hb_003349_080 Hb_003349_080 Hb_000210_220--Hb_003349_080 Hb_061802_010 Hb_061802_010 Hb_000210_220--Hb_061802_010 Hb_000979_200 Hb_000979_200 Hb_000210_220--Hb_000979_200 Hb_138585_050--Hb_001491_010 Hb_000320_180 Hb_000320_180 Hb_138585_050--Hb_000320_180 Hb_008554_070 Hb_008554_070 Hb_138585_050--Hb_008554_070 Hb_024714_010 Hb_024714_010 Hb_138585_050--Hb_024714_010 Hb_004871_040 Hb_004871_040 Hb_138585_050--Hb_004871_040 Hb_001775_110 Hb_001775_110 Hb_001083_020--Hb_001775_110 Hb_000230_510 Hb_000230_510 Hb_001083_020--Hb_000230_510 Hb_017948_010 Hb_017948_010 Hb_001083_020--Hb_017948_010 Hb_012675_060 Hb_012675_060 Hb_001083_020--Hb_012675_060 Hb_001360_050 Hb_001360_050 Hb_001083_020--Hb_001360_050 Hb_009393_210 Hb_009393_210 Hb_001083_020--Hb_009393_210 Hb_004125_040 Hb_004125_040 Hb_001491_010--Hb_004125_040 Hb_021576_030 Hb_021576_030 Hb_001491_010--Hb_021576_030 Hb_001439_060 Hb_001439_060 Hb_001491_010--Hb_001439_060 Hb_001491_010--Hb_008554_070 Hb_000318_160 Hb_000318_160 Hb_003349_080--Hb_000318_160 Hb_000224_140 Hb_000224_140 Hb_003349_080--Hb_000224_140 Hb_003050_280 Hb_003050_280 Hb_003349_080--Hb_003050_280 Hb_068056_030 Hb_068056_030 Hb_003349_080--Hb_068056_030 Hb_000680_140 Hb_000680_140 Hb_003349_080--Hb_000680_140 Hb_002918_290 Hb_002918_290 Hb_003349_080--Hb_002918_290 Hb_000329_180 Hb_000329_180 Hb_061802_010--Hb_000329_180 Hb_001575_020 Hb_001575_020 Hb_061802_010--Hb_001575_020 Hb_071947_010 Hb_071947_010 Hb_061802_010--Hb_071947_010 Hb_005505_020 Hb_005505_020 Hb_061802_010--Hb_005505_020 Hb_000061_300 Hb_000061_300 Hb_061802_010--Hb_000061_300 Hb_003581_100 Hb_003581_100 Hb_000979_200--Hb_003581_100 Hb_004586_170 Hb_004586_170 Hb_000979_200--Hb_004586_170 Hb_028486_030 Hb_028486_030 Hb_000979_200--Hb_028486_030 Hb_001246_060 Hb_001246_060 Hb_000979_200--Hb_001246_060 Hb_026549_040 Hb_026549_040 Hb_000979_200--Hb_026549_040 Hb_012675_050 Hb_012675_050 Hb_000979_200--Hb_012675_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.72178 1.48704 1.72898 2.10606 2.88166 4.34918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.71215 12.1972 9.817 1.55934 7.18937

CAGE analysis