Hb_000329_180

Information

Type -
Description -
Location Contig329: 101024-101542
Sequence    

Annotation

kegg
ID rcu:RCOM_1611000
description Auxin-induced protein X10A, putative
nr
ID XP_002511675.1
description Auxin-induced protein X10A, putative [Ricinus communis]
swissprot
ID O22150
description Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana GN=SAUR36 PE=2 SV=1
trembl
ID B9RD86
description Auxin-induced protein X10A, putative OS=Ricinus communis GN=RCOM_1611000 PE=4 SV=1
Gene Ontology
ID GO:0009862
description auxin-induced protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_180 0.0 - - Auxin-induced protein X10A, putative [Ricinus communis]
2 Hb_000125_030 0.1230959702 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
3 Hb_000260_210 0.1245266894 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003207_170 0.1263879614 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
5 Hb_000061_300 0.1275291205 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
6 Hb_061802_010 0.1277662879 - - hypothetical protein VITISV_011986 [Vitis vinifera]
7 Hb_001575_020 0.1284251001 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001153_060 0.1301806382 - - conserved hypothetical protein [Ricinus communis]
9 Hb_162275_030 0.1316982474 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
10 Hb_027625_010 0.1320347595 - - PREDICTED: protein sym-1-like [Jatropha curcas]
11 Hb_006472_050 0.133128238 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
12 Hb_000189_140 0.134446069 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_009393_210 0.1349235289 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
14 Hb_001357_010 0.1361755927 - - -
15 Hb_000099_130 0.1379051865 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
16 Hb_001006_180 0.1386733384 - - PREDICTED: endonuclease V-like [Jatropha curcas]
17 Hb_002182_030 0.1400252754 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
18 Hb_000210_220 0.1411731632 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
19 Hb_000046_290 0.1418670228 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
20 Hb_005162_070 0.1428795073 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000329_180 Hb_000329_180 Hb_000125_030 Hb_000125_030 Hb_000329_180--Hb_000125_030 Hb_000260_210 Hb_000260_210 Hb_000329_180--Hb_000260_210 Hb_003207_170 Hb_003207_170 Hb_000329_180--Hb_003207_170 Hb_000061_300 Hb_000061_300 Hb_000329_180--Hb_000061_300 Hb_061802_010 Hb_061802_010 Hb_000329_180--Hb_061802_010 Hb_001575_020 Hb_001575_020 Hb_000329_180--Hb_001575_020 Hb_000406_120 Hb_000406_120 Hb_000125_030--Hb_000406_120 Hb_002056_060 Hb_002056_060 Hb_000125_030--Hb_002056_060 Hb_003642_050 Hb_003642_050 Hb_000125_030--Hb_003642_050 Hb_003504_020 Hb_003504_020 Hb_000125_030--Hb_003504_020 Hb_000141_020 Hb_000141_020 Hb_000125_030--Hb_000141_020 Hb_010407_180 Hb_010407_180 Hb_000125_030--Hb_010407_180 Hb_000300_220 Hb_000300_220 Hb_000260_210--Hb_000300_220 Hb_006472_050 Hb_006472_050 Hb_000260_210--Hb_006472_050 Hb_011457_090 Hb_011457_090 Hb_000260_210--Hb_011457_090 Hb_011377_050 Hb_011377_050 Hb_000260_210--Hb_011377_050 Hb_002182_030 Hb_002182_030 Hb_000260_210--Hb_002182_030 Hb_001153_060 Hb_001153_060 Hb_003207_170--Hb_001153_060 Hb_000019_070 Hb_000019_070 Hb_003207_170--Hb_000019_070 Hb_000373_130 Hb_000373_130 Hb_003207_170--Hb_000373_130 Hb_000567_120 Hb_000567_120 Hb_003207_170--Hb_000567_120 Hb_000985_060 Hb_000985_060 Hb_003207_170--Hb_000985_060 Hb_027625_010 Hb_027625_010 Hb_003207_170--Hb_027625_010 Hb_000061_300--Hb_001575_020 Hb_001616_060 Hb_001616_060 Hb_000061_300--Hb_001616_060 Hb_003581_260 Hb_003581_260 Hb_000061_300--Hb_003581_260 Hb_007382_150 Hb_007382_150 Hb_000061_300--Hb_007382_150 Hb_000046_290 Hb_000046_290 Hb_000061_300--Hb_000046_290 Hb_002603_160 Hb_002603_160 Hb_000061_300--Hb_002603_160 Hb_000210_220 Hb_000210_220 Hb_061802_010--Hb_000210_220 Hb_061802_010--Hb_001575_020 Hb_071947_010 Hb_071947_010 Hb_061802_010--Hb_071947_010 Hb_005505_020 Hb_005505_020 Hb_061802_010--Hb_005505_020 Hb_061802_010--Hb_000061_300 Hb_001575_020--Hb_001616_060 Hb_003929_120 Hb_003929_120 Hb_001575_020--Hb_003929_120 Hb_002097_060 Hb_002097_060 Hb_001575_020--Hb_002097_060 Hb_000069_100 Hb_000069_100 Hb_001575_020--Hb_000069_100 Hb_001160_030 Hb_001160_030 Hb_001575_020--Hb_001160_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.1911 27.4978 10.1427 36.0749 14.4188 59.7273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
122.661 117.413 167.188 26.1954 56.8603

CAGE analysis