Hb_001153_060

Information

Type -
Description -
Location Contig1153: 21288-22940
Sequence    

Annotation

kegg
ID rcu:RCOM_1682530
description hypothetical protein
nr
ID XP_002509680.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID A7VLV1
description Protein STAY-GREEN, chloroplastic OS=Pisum sativum GN=SGR PE=2 SV=1
trembl
ID B9RBZ6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1682530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04596: 21340-23191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001153_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003207_170 0.0860156113 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
3 Hb_011457_090 0.0925482278 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
4 Hb_007926_060 0.0990267177 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
5 Hb_006472_050 0.1036397998 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
6 Hb_180301_010 0.1039748476 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
7 Hb_000898_050 0.1061562359 - - -
8 Hb_000635_150 0.1068500099 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
9 Hb_004374_140 0.1072949032 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
10 Hb_000224_120 0.1107240362 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
11 Hb_001519_050 0.110724617 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
12 Hb_000567_120 0.1124905382 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
13 Hb_008544_010 0.1149615615 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
14 Hb_000107_310 0.1157115692 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
15 Hb_001114_130 0.1158134621 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP-like isoform X1 [Jatropha curcas]
16 Hb_001205_150 0.1199235388 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
17 Hb_000856_260 0.1204779745 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
18 Hb_001461_010 0.1207638497 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
19 Hb_000692_220 0.1225872261 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
20 Hb_002005_020 0.1231757647 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001153_060 Hb_001153_060 Hb_003207_170 Hb_003207_170 Hb_001153_060--Hb_003207_170 Hb_011457_090 Hb_011457_090 Hb_001153_060--Hb_011457_090 Hb_007926_060 Hb_007926_060 Hb_001153_060--Hb_007926_060 Hb_006472_050 Hb_006472_050 Hb_001153_060--Hb_006472_050 Hb_180301_010 Hb_180301_010 Hb_001153_060--Hb_180301_010 Hb_000898_050 Hb_000898_050 Hb_001153_060--Hb_000898_050 Hb_000019_070 Hb_000019_070 Hb_003207_170--Hb_000019_070 Hb_000373_130 Hb_000373_130 Hb_003207_170--Hb_000373_130 Hb_000567_120 Hb_000567_120 Hb_003207_170--Hb_000567_120 Hb_000985_060 Hb_000985_060 Hb_003207_170--Hb_000985_060 Hb_027625_010 Hb_027625_010 Hb_003207_170--Hb_027625_010 Hb_011537_110 Hb_011537_110 Hb_011457_090--Hb_011537_110 Hb_000224_120 Hb_000224_120 Hb_011457_090--Hb_000224_120 Hb_000300_220 Hb_000300_220 Hb_011457_090--Hb_000300_220 Hb_000635_150 Hb_000635_150 Hb_011457_090--Hb_000635_150 Hb_004336_050 Hb_004336_050 Hb_011457_090--Hb_004336_050 Hb_004374_140 Hb_004374_140 Hb_007926_060--Hb_004374_140 Hb_004449_200 Hb_004449_200 Hb_007926_060--Hb_004449_200 Hb_008544_010 Hb_008544_010 Hb_007926_060--Hb_008544_010 Hb_006573_220 Hb_006573_220 Hb_007926_060--Hb_006573_220 Hb_001461_010 Hb_001461_010 Hb_007926_060--Hb_001461_010 Hb_001105_070 Hb_001105_070 Hb_007926_060--Hb_001105_070 Hb_002182_030 Hb_002182_030 Hb_006472_050--Hb_002182_030 Hb_001135_210 Hb_001135_210 Hb_006472_050--Hb_001135_210 Hb_000963_180 Hb_000963_180 Hb_006472_050--Hb_000963_180 Hb_006472_050--Hb_000224_120 Hb_000046_290 Hb_000046_290 Hb_006472_050--Hb_000046_290 Hb_004032_100 Hb_004032_100 Hb_180301_010--Hb_004032_100 Hb_180301_010--Hb_004336_050 Hb_000172_030 Hb_000172_030 Hb_180301_010--Hb_000172_030 Hb_180301_010--Hb_004374_140 Hb_000751_130 Hb_000751_130 Hb_180301_010--Hb_000751_130 Hb_007735_030 Hb_007735_030 Hb_180301_010--Hb_007735_030 Hb_003092_030 Hb_003092_030 Hb_000898_050--Hb_003092_030 Hb_037887_010 Hb_037887_010 Hb_000898_050--Hb_037887_010 Hb_001114_130 Hb_001114_130 Hb_000898_050--Hb_001114_130 Hb_000856_260 Hb_000856_260 Hb_000898_050--Hb_000856_260 Hb_006198_080 Hb_006198_080 Hb_000898_050--Hb_006198_080 Hb_006429_010 Hb_006429_010 Hb_000898_050--Hb_006429_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2893 16.1867 6.49694 31.4501 11.9136 44.1129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.1821 50.3171 69.3351 13.4472 14.866

CAGE analysis