Hb_005505_020

Information

Type -
Description -
Location Contig5505: 40794-53092
Sequence    

Annotation

kegg
ID rcu:RCOM_0826630
description Potassium channel AKT1, putative
nr
ID XP_002529373.1
description Potassium channel AKT1, putative [Ricinus communis]
swissprot
ID Q38998
description Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2
trembl
ID B9STQ4
description Potassium channel AKT1, putative OS=Ricinus communis GN=RCOM_0826630 PE=4 SV=1
Gene Ontology
ID GO:0005242
description potassium channel akt1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48254: 40880-41054 , PASA_asmbl_48255: 42110-43050 , PASA_asmbl_48257: 44693-45958
cDNA
(Sanger)
(ID:Location)		 014_K01.ab1: 45674-45870

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005505_020 0.0 - - Potassium channel AKT1, putative [Ricinus communis]
2 Hb_002918_140 0.1239776259 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
3 Hb_006738_010 0.1277684874 - - PREDICTED: uncharacterized protein LOC105634993 [Jatropha curcas]
4 Hb_000563_240 0.1303292636 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
5 Hb_003579_030 0.1307634719 - - phosphatase 2C family protein [Populus trichocarpa]
6 Hb_007645_080 0.1309527587 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
7 Hb_034585_050 0.1324572537 - - -
8 Hb_001575_020 0.1327895059 - - conserved hypothetical protein [Ricinus communis]
9 Hb_019654_090 0.1342080712 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
10 Hb_000264_020 0.1384072769 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
11 Hb_146225_010 0.1389251784 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
12 Hb_005841_050 0.1415496467 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
13 Hb_003086_060 0.1415943042 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
14 Hb_001616_060 0.1425187451 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
15 Hb_061802_010 0.1425487209 - - hypothetical protein VITISV_011986 [Vitis vinifera]
16 Hb_003929_120 0.1427414259 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
17 Hb_000165_010 0.143691222 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
18 Hb_003185_050 0.1447985001 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
19 Hb_002097_060 0.1455062647 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_002053_060 0.1478279 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_005505_020 Hb_005505_020 Hb_002918_140 Hb_002918_140 Hb_005505_020--Hb_002918_140 Hb_006738_010 Hb_006738_010 Hb_005505_020--Hb_006738_010 Hb_000563_240 Hb_000563_240 Hb_005505_020--Hb_000563_240 Hb_003579_030 Hb_003579_030 Hb_005505_020--Hb_003579_030 Hb_007645_080 Hb_007645_080 Hb_005505_020--Hb_007645_080 Hb_034585_050 Hb_034585_050 Hb_005505_020--Hb_034585_050 Hb_002918_140--Hb_034585_050 Hb_001863_420 Hb_001863_420 Hb_002918_140--Hb_001863_420 Hb_001386_050 Hb_001386_050 Hb_002918_140--Hb_001386_050 Hb_001017_070 Hb_001017_070 Hb_002918_140--Hb_001017_070 Hb_017862_010 Hb_017862_010 Hb_002918_140--Hb_017862_010 Hb_000676_240 Hb_000676_240 Hb_002918_140--Hb_000676_240 Hb_006738_010--Hb_034585_050 Hb_001785_040 Hb_001785_040 Hb_006738_010--Hb_001785_040 Hb_006738_010--Hb_002918_140 Hb_001159_200 Hb_001159_200 Hb_006738_010--Hb_001159_200 Hb_183086_040 Hb_183086_040 Hb_006738_010--Hb_183086_040 Hb_155764_020 Hb_155764_020 Hb_000563_240--Hb_155764_020 Hb_001248_080 Hb_001248_080 Hb_000563_240--Hb_001248_080 Hb_000099_060 Hb_000099_060 Hb_000563_240--Hb_000099_060 Hb_007575_070 Hb_007575_070 Hb_000563_240--Hb_007575_070 Hb_011311_010 Hb_011311_010 Hb_000563_240--Hb_011311_010 Hb_001268_140 Hb_001268_140 Hb_000563_240--Hb_001268_140 Hb_002876_120 Hb_002876_120 Hb_003579_030--Hb_002876_120 Hb_002999_050 Hb_002999_050 Hb_003579_030--Hb_002999_050 Hb_002097_060 Hb_002097_060 Hb_003579_030--Hb_002097_060 Hb_020301_040 Hb_020301_040 Hb_003579_030--Hb_020301_040 Hb_001616_030 Hb_001616_030 Hb_003579_030--Hb_001616_030 Hb_001633_030 Hb_001633_030 Hb_003579_030--Hb_001633_030 Hb_003185_050 Hb_003185_050 Hb_007645_080--Hb_003185_050 Hb_002235_280 Hb_002235_280 Hb_007645_080--Hb_002235_280 Hb_019654_090 Hb_019654_090 Hb_007645_080--Hb_019654_090 Hb_000072_080 Hb_000072_080 Hb_007645_080--Hb_000072_080 Hb_000366_090 Hb_000366_090 Hb_007645_080--Hb_000366_090 Hb_000349_290 Hb_000349_290 Hb_007645_080--Hb_000349_290 Hb_010594_030 Hb_010594_030 Hb_034585_050--Hb_010594_030 Hb_003043_120 Hb_003043_120 Hb_034585_050--Hb_003043_120 Hb_011245_020 Hb_011245_020 Hb_034585_050--Hb_011245_020 Hb_034585_050--Hb_017862_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4833 7.37324 0.993268 2.44868 6.32042 9.63686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.4843 51.3162 31.5058 6.10742 9.17611

CAGE analysis