Hb_061802_010

Information

Type -
Description -
Location Contig61802: 7702-11459
Sequence    

Annotation

kegg
ID gmx:102668041
description uncharacterized LOC102668041
nr
ID CAN71246.1
description hypothetical protein VITISV_011986 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5AG48
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011986 PE=4 SV=1
Gene Ontology
ID GO:0004553
description integrase core domain containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061802_010 0.0 - - hypothetical protein VITISV_011986 [Vitis vinifera]
2 Hb_000210_220 0.1161715657 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
3 Hb_000329_180 0.1277662879 - - Auxin-induced protein X10A, putative [Ricinus communis]
4 Hb_001575_020 0.1303434045 - - conserved hypothetical protein [Ricinus communis]
5 Hb_071947_010 0.1325758011 - - -
6 Hb_005505_020 0.1425487209 - - Potassium channel AKT1, putative [Ricinus communis]
7 Hb_000061_300 0.1450971185 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
8 Hb_001006_260 0.1463061918 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
9 Hb_001616_060 0.1469157123 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
10 Hb_000487_310 0.1491026571 - - PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
11 Hb_000169_140 0.1505069567 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
12 Hb_000853_410 0.1516508795 - - -
13 Hb_009393_210 0.1548025912 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
14 Hb_001083_020 0.1570385322 - - -
15 Hb_000223_150 0.1575172748 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
16 Hb_002600_100 0.1575730756 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
17 Hb_001160_030 0.1581767399 transcription factor TF Family: Alfin-like hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
18 Hb_000189_140 0.1587608138 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_005539_360 0.161693677 - - kinesin light chain, putative [Ricinus communis]
20 Hb_005539_240 0.1632994169 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]

Gene co-expression network

sample Hb_061802_010 Hb_061802_010 Hb_000210_220 Hb_000210_220 Hb_061802_010--Hb_000210_220 Hb_000329_180 Hb_000329_180 Hb_061802_010--Hb_000329_180 Hb_001575_020 Hb_001575_020 Hb_061802_010--Hb_001575_020 Hb_071947_010 Hb_071947_010 Hb_061802_010--Hb_071947_010 Hb_005505_020 Hb_005505_020 Hb_061802_010--Hb_005505_020 Hb_000061_300 Hb_000061_300 Hb_061802_010--Hb_000061_300 Hb_138585_050 Hb_138585_050 Hb_000210_220--Hb_138585_050 Hb_001083_020 Hb_001083_020 Hb_000210_220--Hb_001083_020 Hb_001491_010 Hb_001491_010 Hb_000210_220--Hb_001491_010 Hb_003349_080 Hb_003349_080 Hb_000210_220--Hb_003349_080 Hb_000979_200 Hb_000979_200 Hb_000210_220--Hb_000979_200 Hb_000125_030 Hb_000125_030 Hb_000329_180--Hb_000125_030 Hb_000260_210 Hb_000260_210 Hb_000329_180--Hb_000260_210 Hb_003207_170 Hb_003207_170 Hb_000329_180--Hb_003207_170 Hb_000329_180--Hb_000061_300 Hb_000329_180--Hb_001575_020 Hb_001616_060 Hb_001616_060 Hb_001575_020--Hb_001616_060 Hb_003929_120 Hb_003929_120 Hb_001575_020--Hb_003929_120 Hb_002097_060 Hb_002097_060 Hb_001575_020--Hb_002097_060 Hb_000069_100 Hb_000069_100 Hb_001575_020--Hb_000069_100 Hb_001575_020--Hb_000061_300 Hb_001160_030 Hb_001160_030 Hb_001575_020--Hb_001160_030 Hb_000622_040 Hb_000622_040 Hb_071947_010--Hb_000622_040 Hb_005000_070 Hb_005000_070 Hb_071947_010--Hb_005000_070 Hb_007924_020 Hb_007924_020 Hb_071947_010--Hb_007924_020 Hb_071947_010--Hb_001160_030 Hb_001863_480 Hb_001863_480 Hb_071947_010--Hb_001863_480 Hb_002918_140 Hb_002918_140 Hb_005505_020--Hb_002918_140 Hb_006738_010 Hb_006738_010 Hb_005505_020--Hb_006738_010 Hb_000563_240 Hb_000563_240 Hb_005505_020--Hb_000563_240 Hb_003579_030 Hb_003579_030 Hb_005505_020--Hb_003579_030 Hb_007645_080 Hb_007645_080 Hb_005505_020--Hb_007645_080 Hb_034585_050 Hb_034585_050 Hb_005505_020--Hb_034585_050 Hb_000061_300--Hb_001616_060 Hb_003581_260 Hb_003581_260 Hb_000061_300--Hb_003581_260 Hb_007382_150 Hb_007382_150 Hb_000061_300--Hb_007382_150 Hb_000046_290 Hb_000046_290 Hb_000061_300--Hb_000046_290 Hb_002603_160 Hb_002603_160 Hb_000061_300--Hb_002603_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.580744 0.159797 0.0628955 0.0759591 0.204992 0.483325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.16258 1.23628 1.22814 0.206037 0.684827

CAGE analysis