Hb_005000_070

Information

Type -
Description -
Location Contig5000: 60444-62950
Sequence    

Annotation

kegg
ID pop:POPTR_0012s01650g
description POPTRDRAFT_661486; hypothetical protein
nr
ID XP_002317757.1
description hypothetical protein POPTR_0012s01650g [Populus trichocarpa]
swissprot
ID Q94K18
description Uncharacterized protein At4g29660 OS=Arabidopsis thaliana GN=EMB2752 PE=4 SV=1
trembl
ID B9I561
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01650g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45793: 61594-62909 , PASA_asmbl_45794: 63398-71604
cDNA
(Sanger)
(ID:Location)		 024_F08.ab1: 63420-71142 , 027_N02.ab1: 63400-71142 , 036_H06.ab1: 63400-71142

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_070 0.0 - - hypothetical protein POPTR_0012s01650g [Populus trichocarpa]
2 Hb_000230_380 0.0800422826 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like isoform X1 [Jatropha curcas]
3 Hb_000429_170 0.0964221406 - - PREDICTED: adenylosuccinate synthetase 2, chloroplastic [Jatropha curcas]
4 Hb_007924_020 0.0974546477 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
5 Hb_000622_040 0.1028078512 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
6 Hb_000061_300 0.1048638971 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
7 Hb_002056_060 0.105840345 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
8 Hb_000317_280 0.105951868 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
9 Hb_004951_040 0.1062895232 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
10 Hb_001616_030 0.106472008 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
11 Hb_000146_020 0.1065773843 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
12 Hb_031862_110 0.1066577571 - - calcium-dependent protein kinase [Hevea brasiliensis]
13 Hb_000120_680 0.1075555177 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
14 Hb_008289_060 0.1094274723 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
15 Hb_000834_270 0.1101207126 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
16 Hb_007943_090 0.1102529942 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
17 Hb_004993_050 0.1123411308 - - -
18 Hb_005539_360 0.1125590697 - - kinesin light chain, putative [Ricinus communis]
19 Hb_055062_030 0.1144922149 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
20 Hb_000223_150 0.1146430078 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]

Gene co-expression network

sample Hb_005000_070 Hb_005000_070 Hb_000230_380 Hb_000230_380 Hb_005000_070--Hb_000230_380 Hb_000429_170 Hb_000429_170 Hb_005000_070--Hb_000429_170 Hb_007924_020 Hb_007924_020 Hb_005000_070--Hb_007924_020 Hb_000622_040 Hb_000622_040 Hb_005000_070--Hb_000622_040 Hb_000061_300 Hb_000061_300 Hb_005000_070--Hb_000061_300 Hb_002056_060 Hb_002056_060 Hb_005000_070--Hb_002056_060 Hb_004951_040 Hb_004951_040 Hb_000230_380--Hb_004951_040 Hb_031862_110 Hb_031862_110 Hb_000230_380--Hb_031862_110 Hb_001616_030 Hb_001616_030 Hb_000230_380--Hb_001616_030 Hb_020301_040 Hb_020301_040 Hb_000230_380--Hb_020301_040 Hb_000563_250 Hb_000563_250 Hb_000230_380--Hb_000563_250 Hb_002253_070 Hb_002253_070 Hb_000429_170--Hb_002253_070 Hb_000429_170--Hb_007924_020 Hb_034299_060 Hb_034299_060 Hb_000429_170--Hb_034299_060 Hb_000429_170--Hb_000622_040 Hb_003151_050 Hb_003151_050 Hb_000429_170--Hb_003151_050 Hb_000834_270 Hb_000834_270 Hb_000429_170--Hb_000834_270 Hb_007924_020--Hb_000622_040 Hb_044662_070 Hb_044662_070 Hb_007924_020--Hb_044662_070 Hb_008289_060 Hb_008289_060 Hb_007924_020--Hb_008289_060 Hb_003408_030 Hb_003408_030 Hb_007924_020--Hb_003408_030 Hb_003376_120 Hb_003376_120 Hb_007924_020--Hb_003376_120 Hb_000922_270 Hb_000922_270 Hb_000622_040--Hb_000922_270 Hb_009404_020 Hb_009404_020 Hb_000622_040--Hb_009404_020 Hb_000622_040--Hb_034299_060 Hb_001575_020 Hb_001575_020 Hb_000061_300--Hb_001575_020 Hb_001616_060 Hb_001616_060 Hb_000061_300--Hb_001616_060 Hb_003581_260 Hb_003581_260 Hb_000061_300--Hb_003581_260 Hb_007382_150 Hb_007382_150 Hb_000061_300--Hb_007382_150 Hb_000046_290 Hb_000046_290 Hb_000061_300--Hb_000046_290 Hb_002603_160 Hb_002603_160 Hb_000061_300--Hb_002603_160 Hb_004993_050 Hb_004993_050 Hb_002056_060--Hb_004993_050 Hb_007943_090 Hb_007943_090 Hb_002056_060--Hb_007943_090 Hb_000125_030 Hb_000125_030 Hb_002056_060--Hb_000125_030 Hb_000072_080 Hb_000072_080 Hb_002056_060--Hb_000072_080 Hb_000120_680 Hb_000120_680 Hb_002056_060--Hb_000120_680 Hb_005431_010 Hb_005431_010 Hb_002056_060--Hb_005431_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.0032 12.1033 9.70283 5.35668 24.6114 16.7738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.4814 50.1791 65.8936 19.9951 17.7887

CAGE analysis