Hb_000230_380

Information

Type -
Description -
Location Contig230: 344658-357230
Sequence    

Annotation

kegg
ID rcu:RCOM_0678410
description ubiquitin-protein ligase, putative
nr
ID XP_012069482.1
description PREDICTED: F-box/kelch-repeat protein At3g06240-like isoform X1 [Jatropha curcas]
swissprot
ID Q8GXC7
description F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1
trembl
ID B9RST8
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0678410 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box kelch-repeat protein at3g06240-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24038: 344783-345078 , PASA_asmbl_24039: 345415-345647 , PASA_asmbl_24040: 346075-347358 , PASA_asmbl_24041: 354513-354762 , PASA_asmbl_24042: 355635-355902
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_380 0.0 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like isoform X1 [Jatropha curcas]
2 Hb_005000_070 0.0800422826 - - hypothetical protein POPTR_0012s01650g [Populus trichocarpa]
3 Hb_004951_040 0.1079816125 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
4 Hb_031862_110 0.1108253373 - - calcium-dependent protein kinase [Hevea brasiliensis]
5 Hb_001616_030 0.11213507 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
6 Hb_020301_040 0.1122588433 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
7 Hb_000563_250 0.1126810948 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
8 Hb_003408_030 0.1139333137 - - PREDICTED: protein YIF1B [Jatropha curcas]
9 Hb_003376_120 0.1142998893 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
10 Hb_019654_090 0.1144282395 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
11 Hb_012505_010 0.1147251637 - - mak, putative [Ricinus communis]
12 Hb_021409_030 0.1163424928 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
13 Hb_000634_100 0.1185845325 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
14 Hb_007924_020 0.1192172999 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
15 Hb_005532_060 0.1196132411 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
16 Hb_002056_060 0.1200893483 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
17 Hb_000120_680 0.1205856671 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
18 Hb_007943_090 0.1212897339 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
19 Hb_000061_300 0.1219232726 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
20 Hb_006647_020 0.1235186754 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000230_380 Hb_000230_380 Hb_005000_070 Hb_005000_070 Hb_000230_380--Hb_005000_070 Hb_004951_040 Hb_004951_040 Hb_000230_380--Hb_004951_040 Hb_031862_110 Hb_031862_110 Hb_000230_380--Hb_031862_110 Hb_001616_030 Hb_001616_030 Hb_000230_380--Hb_001616_030 Hb_020301_040 Hb_020301_040 Hb_000230_380--Hb_020301_040 Hb_000563_250 Hb_000563_250 Hb_000230_380--Hb_000563_250 Hb_000429_170 Hb_000429_170 Hb_005000_070--Hb_000429_170 Hb_007924_020 Hb_007924_020 Hb_005000_070--Hb_007924_020 Hb_000622_040 Hb_000622_040 Hb_005000_070--Hb_000622_040 Hb_000061_300 Hb_000061_300 Hb_005000_070--Hb_000061_300 Hb_002056_060 Hb_002056_060 Hb_005000_070--Hb_002056_060 Hb_008453_090 Hb_008453_090 Hb_004951_040--Hb_008453_090 Hb_008289_060 Hb_008289_060 Hb_004951_040--Hb_008289_060 Hb_055062_030 Hb_055062_030 Hb_004951_040--Hb_055062_030 Hb_003018_200 Hb_003018_200 Hb_004951_040--Hb_003018_200 Hb_000223_150 Hb_000223_150 Hb_004951_040--Hb_000223_150 Hb_005333_130 Hb_005333_130 Hb_004951_040--Hb_005333_130 Hb_000431_010 Hb_000431_010 Hb_031862_110--Hb_000431_010 Hb_000240_090 Hb_000240_090 Hb_031862_110--Hb_000240_090 Hb_001014_040 Hb_001014_040 Hb_031862_110--Hb_001014_040 Hb_006711_060 Hb_006711_060 Hb_031862_110--Hb_006711_060 Hb_000617_150 Hb_000617_150 Hb_031862_110--Hb_000617_150 Hb_031862_110--Hb_002056_060 Hb_001616_030--Hb_000563_250 Hb_001616_030--Hb_000240_090 Hb_003579_030 Hb_003579_030 Hb_001616_030--Hb_003579_030 Hb_003376_030 Hb_003376_030 Hb_001616_030--Hb_003376_030 Hb_001160_030 Hb_001160_030 Hb_001616_030--Hb_001160_030 Hb_153112_030 Hb_153112_030 Hb_001616_030--Hb_153112_030 Hb_002876_120 Hb_002876_120 Hb_020301_040--Hb_002876_120 Hb_020301_040--Hb_003579_030 Hb_000975_300 Hb_000975_300 Hb_020301_040--Hb_000975_300 Hb_007594_120 Hb_007594_120 Hb_020301_040--Hb_007594_120 Hb_004375_140 Hb_004375_140 Hb_020301_040--Hb_004375_140 Hb_021409_030 Hb_021409_030 Hb_020301_040--Hb_021409_030 Hb_000120_680 Hb_000120_680 Hb_000563_250--Hb_000120_680 Hb_000563_250--Hb_000240_090 Hb_000563_250--Hb_021409_030 Hb_000086_280 Hb_000086_280 Hb_000563_250--Hb_000086_280 Hb_021409_160 Hb_021409_160 Hb_000563_250--Hb_021409_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.38462 0.951589 1.18319 0.412029 1.89975 1.20498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.75537 4.06488 5.64041 1.00189 0.979438

CAGE analysis