Hb_009404_020

Information

Type -
Description -
Location Contig9404: 25073-26811
Sequence    

Annotation

kegg
ID rcu:RCOM_0396440
description hypothetical protein
nr
ID XP_002533162.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O64818
description Uncharacterized protein At2g23090 OS=Arabidopsis thaliana GN=At2g23090 PE=1 SV=1
trembl
ID B9T4J3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0396440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63163: 25166-26876
cDNA
(Sanger)
(ID:Location)		 037_J17.ab1: 25166-26871

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009404_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011465_040 0.0690610631 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
3 Hb_001616_060 0.0867140667 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
4 Hb_000487_310 0.0868445963 - - PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
5 Hb_004108_230 0.0870082046 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
6 Hb_000922_270 0.08709053 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
7 Hb_002918_200 0.0878261919 - - -
8 Hb_000212_260 0.0891150759 - - acyl-carrier-protein [Triadica sebifera]
9 Hb_000051_040 0.0894587089 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
10 Hb_007021_020 0.0895103641 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
11 Hb_008289_060 0.0899566336 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
12 Hb_000567_170 0.0921818971 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
13 Hb_000030_100 0.0957284845 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
14 Hb_002716_070 0.0968539272 - - PREDICTED: protein ABIL2 [Jatropha curcas]
15 Hb_000622_040 0.0988043556 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
16 Hb_001538_110 0.0996562051 - - PREDICTED: histone deacetylase 6, partial [Oryzias latipes]
17 Hb_000120_750 0.1005181421 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
18 Hb_000134_330 0.1011218112 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
19 Hb_010172_070 0.1018811111 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
20 Hb_003175_040 0.1023351882 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009404_020 Hb_009404_020 Hb_011465_040 Hb_011465_040 Hb_009404_020--Hb_011465_040 Hb_001616_060 Hb_001616_060 Hb_009404_020--Hb_001616_060 Hb_000487_310 Hb_000487_310 Hb_009404_020--Hb_000487_310 Hb_004108_230 Hb_004108_230 Hb_009404_020--Hb_004108_230 Hb_000922_270 Hb_000922_270 Hb_009404_020--Hb_000922_270 Hb_002918_200 Hb_002918_200 Hb_009404_020--Hb_002918_200 Hb_005701_020 Hb_005701_020 Hb_011465_040--Hb_005701_020 Hb_000030_100 Hb_000030_100 Hb_011465_040--Hb_000030_100 Hb_000376_050 Hb_000376_050 Hb_011465_040--Hb_000376_050 Hb_011465_040--Hb_002918_200 Hb_000703_140 Hb_000703_140 Hb_011465_040--Hb_000703_140 Hb_001575_020 Hb_001575_020 Hb_001616_060--Hb_001575_020 Hb_000069_100 Hb_000069_100 Hb_001616_060--Hb_000069_100 Hb_002078_460 Hb_002078_460 Hb_001616_060--Hb_002078_460 Hb_007382_150 Hb_007382_150 Hb_001616_060--Hb_007382_150 Hb_002097_060 Hb_002097_060 Hb_001616_060--Hb_002097_060 Hb_008289_060 Hb_008289_060 Hb_001616_060--Hb_008289_060 Hb_002119_120 Hb_002119_120 Hb_000487_310--Hb_002119_120 Hb_001711_030 Hb_001711_030 Hb_000487_310--Hb_001711_030 Hb_000487_310--Hb_004108_230 Hb_005432_030 Hb_005432_030 Hb_000487_310--Hb_005432_030 Hb_003777_180 Hb_003777_180 Hb_000487_310--Hb_003777_180 Hb_004108_230--Hb_002918_200 Hb_000120_750 Hb_000120_750 Hb_004108_230--Hb_000120_750 Hb_003175_040 Hb_003175_040 Hb_004108_230--Hb_003175_040 Hb_004837_140 Hb_004837_140 Hb_004108_230--Hb_004837_140 Hb_011794_070 Hb_011794_070 Hb_004108_230--Hb_011794_070 Hb_044662_070 Hb_044662_070 Hb_004108_230--Hb_044662_070 Hb_003408_020 Hb_003408_020 Hb_000922_270--Hb_003408_020 Hb_007666_020 Hb_007666_020 Hb_000922_270--Hb_007666_020 Hb_010172_070 Hb_010172_070 Hb_000922_270--Hb_010172_070 Hb_000922_270--Hb_001711_030 Hb_000051_040 Hb_000051_040 Hb_000922_270--Hb_000051_040 Hb_014720_080 Hb_014720_080 Hb_000922_270--Hb_014720_080 Hb_002918_200--Hb_004837_140 Hb_000834_270 Hb_000834_270 Hb_002918_200--Hb_000834_270 Hb_002918_200--Hb_003175_040 Hb_000170_010 Hb_000170_010 Hb_002918_200--Hb_000170_010 Hb_002027_210 Hb_002027_210 Hb_002918_200--Hb_002027_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
246.267 53.6347 36.6768 43.199 222.191 192.634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
475.674 489.266 341.538 84.2735 75.9335

CAGE analysis