Hb_001491_010

Information

Type -
Description -
Location Contig1491: 8378-10897
Sequence    

Annotation

kegg
ID pop:POPTR_0008s19520g
description POPTRDRAFT_820872; hypothetical protein
nr
ID XP_012091988.1
description PREDICTED: uncharacterized protein LOC105649805 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21732 PE=4 SV=1
Gene Ontology
ID GO:0005634
description PREDICTED: uncharacterized protein LOC105649805

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12401: 8540-10831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001491_010 0.0 - - PREDICTED: uncharacterized protein LOC105649805 [Jatropha curcas]
2 Hb_004125_040 0.0757475667 - - -
3 Hb_138585_050 0.0766013638 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
4 Hb_021576_030 0.1011379495 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
5 Hb_000210_220 0.1113545675 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
6 Hb_001439_060 0.1115424017 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
7 Hb_008554_070 0.1119628371 - - PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]
8 Hb_011909_100 0.1121730461 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001775_110 0.1136785378 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
10 Hb_003050_280 0.1157752054 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
11 Hb_003050_250 0.1191838912 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
12 Hb_012760_190 0.120918984 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
13 Hb_003349_080 0.1237237164 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
14 Hb_012675_050 0.1261882815 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000962_040 0.1269591732 - - heat shock protein binding protein, putative [Ricinus communis]
16 Hb_007576_170 0.1269957831 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000997_360 0.1272430484 - - hypothetical protein AALP_AAs70636U000100 [Arabis alpina]
18 Hb_001728_060 0.1274719259 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
19 Hb_018133_090 0.1276769039 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001083_020 0.1277919868 - - -

Gene co-expression network

sample Hb_001491_010 Hb_001491_010 Hb_004125_040 Hb_004125_040 Hb_001491_010--Hb_004125_040 Hb_138585_050 Hb_138585_050 Hb_001491_010--Hb_138585_050 Hb_021576_030 Hb_021576_030 Hb_001491_010--Hb_021576_030 Hb_000210_220 Hb_000210_220 Hb_001491_010--Hb_000210_220 Hb_001439_060 Hb_001439_060 Hb_001491_010--Hb_001439_060 Hb_008554_070 Hb_008554_070 Hb_001491_010--Hb_008554_070 Hb_003050_250 Hb_003050_250 Hb_004125_040--Hb_003050_250 Hb_003050_280 Hb_003050_280 Hb_004125_040--Hb_003050_280 Hb_004125_040--Hb_021576_030 Hb_019113_020 Hb_019113_020 Hb_004125_040--Hb_019113_020 Hb_007576_170 Hb_007576_170 Hb_004125_040--Hb_007576_170 Hb_000320_180 Hb_000320_180 Hb_138585_050--Hb_000320_180 Hb_138585_050--Hb_008554_070 Hb_138585_050--Hb_000210_220 Hb_024714_010 Hb_024714_010 Hb_138585_050--Hb_024714_010 Hb_004871_040 Hb_004871_040 Hb_138585_050--Hb_004871_040 Hb_087749_010 Hb_087749_010 Hb_021576_030--Hb_087749_010 Hb_005847_060 Hb_005847_060 Hb_021576_030--Hb_005847_060 Hb_002613_020 Hb_002613_020 Hb_021576_030--Hb_002613_020 Hb_021576_030--Hb_004871_040 Hb_001083_020 Hb_001083_020 Hb_000210_220--Hb_001083_020 Hb_003349_080 Hb_003349_080 Hb_000210_220--Hb_003349_080 Hb_061802_010 Hb_061802_010 Hb_000210_220--Hb_061802_010 Hb_000979_200 Hb_000979_200 Hb_000210_220--Hb_000979_200 Hb_018133_090 Hb_018133_090 Hb_001439_060--Hb_018133_090 Hb_000861_020 Hb_000861_020 Hb_001439_060--Hb_000861_020 Hb_015941_020 Hb_015941_020 Hb_001439_060--Hb_015941_020 Hb_012760_190 Hb_012760_190 Hb_001439_060--Hb_012760_190 Hb_000337_050 Hb_000337_050 Hb_001439_060--Hb_000337_050 Hb_008554_070--Hb_024714_010 Hb_002016_120 Hb_002016_120 Hb_008554_070--Hb_002016_120 Hb_020000_010 Hb_020000_010 Hb_008554_070--Hb_020000_010 Hb_001235_030 Hb_001235_030 Hb_008554_070--Hb_001235_030 Hb_025240_040 Hb_025240_040 Hb_008554_070--Hb_025240_040 Hb_011909_100 Hb_011909_100 Hb_008554_070--Hb_011909_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.98333 1.65669 7.49385 6.66871 8.67474 13.3765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.099 27.6159 18.9076 7.68618 23.0936

CAGE analysis