Hb_012760_190

Information

Type -
Description -
Location Contig12760: 130272-137411
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06210g
description POPTRDRAFT_576417; Male sterility protein 2
nr
ID XP_012090891.1
description PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
swissprot
ID Q9M2G7
description Lipid phosphate phosphatase delta OS=Arabidopsis thaliana GN=LPPD PE=2 SV=1
trembl
ID B9IID5
description Male sterility protein 2 OS=Populus trichocarpa GN=POPTR_0016s06210g PE=4 SV=2
Gene Ontology
ID GO:0016020
description fatty acyl- reductase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08438: 137184-137409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012760_190 0.0 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
2 Hb_114336_020 0.103671401 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
3 Hb_103118_010 0.1186738097 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
4 Hb_008554_070 0.1188590205 - - PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]
5 Hb_001439_060 0.1196145908 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
6 Hb_001491_010 0.120918984 - - PREDICTED: uncharacterized protein LOC105649805 [Jatropha curcas]
7 Hb_004116_140 0.1213484912 - - nuclear transcription factor, X-box binding, putative [Ricinus communis]
8 Hb_002221_040 0.1233076325 - - PREDICTED: uncharacterized protein LOC105639851 [Jatropha curcas]
9 Hb_011909_100 0.12438502 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001546_060 0.1244051274 - - PREDICTED: uncharacterized protein LOC105133943 isoform X4 [Populus euphratica]
11 Hb_018133_090 0.1255056076 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000143_030 0.1270176398 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
13 Hb_001898_160 0.1282393717 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
14 Hb_002685_210 0.130811806 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
15 Hb_000206_210 0.1310911782 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
16 Hb_024185_020 0.1326867742 - - -
17 Hb_001235_030 0.1332299243 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
18 Hb_000047_030 0.1344077539 - - tfiif-alpha, putative [Ricinus communis]
19 Hb_000236_070 0.1348568438 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001775_110 0.1354129911 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]

Gene co-expression network

sample Hb_012760_190 Hb_012760_190 Hb_114336_020 Hb_114336_020 Hb_012760_190--Hb_114336_020 Hb_103118_010 Hb_103118_010 Hb_012760_190--Hb_103118_010 Hb_008554_070 Hb_008554_070 Hb_012760_190--Hb_008554_070 Hb_001439_060 Hb_001439_060 Hb_012760_190--Hb_001439_060 Hb_001491_010 Hb_001491_010 Hb_012760_190--Hb_001491_010 Hb_004116_140 Hb_004116_140 Hb_012760_190--Hb_004116_140 Hb_001235_030 Hb_001235_030 Hb_114336_020--Hb_001235_030 Hb_172932_010 Hb_172932_010 Hb_114336_020--Hb_172932_010 Hb_011534_030 Hb_011534_030 Hb_114336_020--Hb_011534_030 Hb_001775_110 Hb_001775_110 Hb_114336_020--Hb_001775_110 Hb_000398_040 Hb_000398_040 Hb_114336_020--Hb_000398_040 Hb_027625_010 Hb_027625_010 Hb_114336_020--Hb_027625_010 Hb_000061_210 Hb_000061_210 Hb_103118_010--Hb_000061_210 Hb_012675_050 Hb_012675_050 Hb_103118_010--Hb_012675_050 Hb_000861_020 Hb_000861_020 Hb_103118_010--Hb_000861_020 Hb_003688_150 Hb_003688_150 Hb_103118_010--Hb_003688_150 Hb_002408_020 Hb_002408_020 Hb_103118_010--Hb_002408_020 Hb_000046_050 Hb_000046_050 Hb_103118_010--Hb_000046_050 Hb_024714_010 Hb_024714_010 Hb_008554_070--Hb_024714_010 Hb_002016_120 Hb_002016_120 Hb_008554_070--Hb_002016_120 Hb_020000_010 Hb_020000_010 Hb_008554_070--Hb_020000_010 Hb_008554_070--Hb_001235_030 Hb_025240_040 Hb_025240_040 Hb_008554_070--Hb_025240_040 Hb_011909_100 Hb_011909_100 Hb_008554_070--Hb_011909_100 Hb_018133_090 Hb_018133_090 Hb_001439_060--Hb_018133_090 Hb_001439_060--Hb_000861_020 Hb_001439_060--Hb_001491_010 Hb_015941_020 Hb_015941_020 Hb_001439_060--Hb_015941_020 Hb_000337_050 Hb_000337_050 Hb_001439_060--Hb_000337_050 Hb_004125_040 Hb_004125_040 Hb_001491_010--Hb_004125_040 Hb_138585_050 Hb_138585_050 Hb_001491_010--Hb_138585_050 Hb_021576_030 Hb_021576_030 Hb_001491_010--Hb_021576_030 Hb_000210_220 Hb_000210_220 Hb_001491_010--Hb_000210_220 Hb_001491_010--Hb_008554_070 Hb_005183_120 Hb_005183_120 Hb_004116_140--Hb_005183_120 Hb_000143_030 Hb_000143_030 Hb_004116_140--Hb_000143_030 Hb_000676_150 Hb_000676_150 Hb_004116_140--Hb_000676_150 Hb_034482_020 Hb_034482_020 Hb_004116_140--Hb_034482_020 Hb_000482_090 Hb_000482_090 Hb_004116_140--Hb_000482_090 Hb_024185_020 Hb_024185_020 Hb_004116_140--Hb_024185_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.147089 0.0226102 0.0741244 0.126672 0.230234 0.206267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.2803 0.306349 0.37462 0.155591 0.339456

CAGE analysis