Hb_004116_140

Information

Type -
Description -
Location Contig4116: 147159-155255
Sequence    

Annotation

kegg
ID rcu:RCOM_0179350
description nuclear transcription factor, X-box binding, putative
nr
ID XP_002533384.1
description nuclear transcription factor, X-box binding, putative [Ricinus communis]
swissprot
ID Q9FFK8
description NF-X1-type zinc finger protein NFXL2 OS=Arabidopsis thaliana GN=NFXL2 PE=1 SV=2
trembl
ID B9T565
description Nuclear transcription factor, X-box binding, putative OS=Ricinus communis GN=RCOM_0179350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40723: 147656-147888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_140 0.0 - - nuclear transcription factor, X-box binding, putative [Ricinus communis]
2 Hb_005183_120 0.0954286597 - - protein translocase, putative [Ricinus communis]
3 Hb_000143_030 0.1044120711 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
4 Hb_000676_150 0.1052724016 - - 50S ribosomal protein L7/L12, putative [Ricinus communis]
5 Hb_034482_020 0.1061472253 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
6 Hb_000482_090 0.1072826427 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
7 Hb_024185_020 0.107497052 - - -
8 Hb_012098_080 0.1083906951 - - KOM, putative [Ricinus communis]
9 Hb_001959_210 0.1084632711 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
10 Hb_000053_100 0.1106520369 - - PREDICTED: uncharacterized protein LOC105642071 [Jatropha curcas]
11 Hb_000648_110 0.1115397752 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
12 Hb_000815_070 0.1126839739 - - PREDICTED: methyltransferase-like protein 7A [Jatropha curcas]
13 Hb_000841_020 0.114383912 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
14 Hb_015934_070 0.1169887171 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
15 Hb_127552_030 0.1202311225 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
16 Hb_001545_080 0.1206842287 - - PREDICTED: tRNA pseudouridine(38/39) synthase isoform X3 [Jatropha curcas]
17 Hb_001789_070 0.1207003741 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
18 Hb_012760_190 0.1213484912 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
19 Hb_000206_210 0.1221247942 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
20 Hb_017225_020 0.127194895 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]

Gene co-expression network

sample Hb_004116_140 Hb_004116_140 Hb_005183_120 Hb_005183_120 Hb_004116_140--Hb_005183_120 Hb_000143_030 Hb_000143_030 Hb_004116_140--Hb_000143_030 Hb_000676_150 Hb_000676_150 Hb_004116_140--Hb_000676_150 Hb_034482_020 Hb_034482_020 Hb_004116_140--Hb_034482_020 Hb_000482_090 Hb_000482_090 Hb_004116_140--Hb_000482_090 Hb_024185_020 Hb_024185_020 Hb_004116_140--Hb_024185_020 Hb_005183_120--Hb_000676_150 Hb_000985_030 Hb_000985_030 Hb_005183_120--Hb_000985_030 Hb_000165_160 Hb_000165_160 Hb_005183_120--Hb_000165_160 Hb_001489_080 Hb_001489_080 Hb_005183_120--Hb_001489_080 Hb_001545_080 Hb_001545_080 Hb_005183_120--Hb_001545_080 Hb_000783_020 Hb_000783_020 Hb_005183_120--Hb_000783_020 Hb_000143_030--Hb_005183_120 Hb_009113_070 Hb_009113_070 Hb_000143_030--Hb_009113_070 Hb_001898_160 Hb_001898_160 Hb_000143_030--Hb_001898_160 Hb_000047_030 Hb_000047_030 Hb_000143_030--Hb_000047_030 Hb_000143_030--Hb_000676_150 Hb_034380_020 Hb_034380_020 Hb_000676_150--Hb_034380_020 Hb_000676_150--Hb_000482_090 Hb_011942_090 Hb_011942_090 Hb_000676_150--Hb_011942_090 Hb_000676_150--Hb_000165_160 Hb_127552_030 Hb_127552_030 Hb_000676_150--Hb_127552_030 Hb_002028_150 Hb_002028_150 Hb_034482_020--Hb_002028_150 Hb_000976_430 Hb_000976_430 Hb_034482_020--Hb_000976_430 Hb_002374_100 Hb_002374_100 Hb_034482_020--Hb_002374_100 Hb_000621_070 Hb_000621_070 Hb_034482_020--Hb_000621_070 Hb_000815_070 Hb_000815_070 Hb_034482_020--Hb_000815_070 Hb_002005_020 Hb_002005_020 Hb_000482_090--Hb_002005_020 Hb_004218_110 Hb_004218_110 Hb_000482_090--Hb_004218_110 Hb_001959_210 Hb_001959_210 Hb_000482_090--Hb_001959_210 Hb_002759_060 Hb_002759_060 Hb_000482_090--Hb_002759_060 Hb_004254_120 Hb_004254_120 Hb_000482_090--Hb_004254_120 Hb_172932_010 Hb_172932_010 Hb_000482_090--Hb_172932_010 Hb_000206_210 Hb_000206_210 Hb_024185_020--Hb_000206_210 Hb_024185_020--Hb_004254_120 Hb_003032_040 Hb_003032_040 Hb_024185_020--Hb_003032_040 Hb_026527_030 Hb_026527_030 Hb_024185_020--Hb_026527_030 Hb_009838_080 Hb_009838_080 Hb_024185_020--Hb_009838_080 Hb_000648_110 Hb_000648_110 Hb_024185_020--Hb_000648_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.884541 0.143985 0.743145 0.705224 1.25202 0.95994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.8748 1.20498 1.84404 1.20852 1.09272

CAGE analysis