Hb_000403_070

Information

Type -
Description -
Location Contig403: 84335-93905
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012351mg
description hypothetical protein
nr
ID XP_012075254.1
description PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9XIK3
description Iron-sulfur assembly protein IscA, chloroplastic OS=Arabidopsis thaliana GN=ISCA PE=2 SV=2
trembl
ID A0A067KGP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09426 PE=4 SV=1
Gene Ontology
ID GO:0005198
description iron-sulfur assembly protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39958: 84299-93865 , PASA_asmbl_39960: 93059-93840
cDNA
(Sanger)
(ID:Location)		 004_J17.ab1: 84471-93846 , 020_D06.ab1: 84387-93865

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000403_070 0.0 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_006846_150 0.0736684489 - - conserved hypothetical protein [Ricinus communis]
3 Hb_140627_010 0.0808641831 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001575_060 0.0826091552 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
5 Hb_001240_010 0.0826765639 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
6 Hb_000465_070 0.0835251614 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
7 Hb_000457_290 0.0856609965 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
8 Hb_001892_070 0.0887232016 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
9 Hb_011689_120 0.0889507286 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
10 Hb_000035_480 0.0894056369 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
11 Hb_002609_200 0.0921883165 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_003050_250 0.0926517813 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
13 Hb_000733_180 0.0939729433 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
14 Hb_002872_050 0.0941469968 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
15 Hb_002677_020 0.0952285938 - - PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]
16 Hb_008566_030 0.0999466105 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
17 Hb_003106_100 0.1011767338 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
18 Hb_011457_050 0.1018666725 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
19 Hb_005843_140 0.1020574045 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
20 Hb_007827_010 0.1040643276 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]

Gene co-expression network

sample Hb_000403_070 Hb_000403_070 Hb_006846_150 Hb_006846_150 Hb_000403_070--Hb_006846_150 Hb_140627_010 Hb_140627_010 Hb_000403_070--Hb_140627_010 Hb_001575_060 Hb_001575_060 Hb_000403_070--Hb_001575_060 Hb_001240_010 Hb_001240_010 Hb_000403_070--Hb_001240_010 Hb_000465_070 Hb_000465_070 Hb_000403_070--Hb_000465_070 Hb_000457_290 Hb_000457_290 Hb_000403_070--Hb_000457_290 Hb_000811_070 Hb_000811_070 Hb_006846_150--Hb_000811_070 Hb_011689_120 Hb_011689_120 Hb_006846_150--Hb_011689_120 Hb_000487_260 Hb_000487_260 Hb_006846_150--Hb_000487_260 Hb_004951_060 Hb_004951_060 Hb_006846_150--Hb_004951_060 Hb_012799_170 Hb_012799_170 Hb_006846_150--Hb_012799_170 Hb_000035_480 Hb_000035_480 Hb_140627_010--Hb_000035_480 Hb_140627_010--Hb_000457_290 Hb_140627_010--Hb_001240_010 Hb_140627_010--Hb_006846_150 Hb_000392_550 Hb_000392_550 Hb_140627_010--Hb_000392_550 Hb_003050_250 Hb_003050_250 Hb_001575_060--Hb_003050_250 Hb_001728_060 Hb_001728_060 Hb_001575_060--Hb_001728_060 Hb_001575_060--Hb_001240_010 Hb_000107_150 Hb_000107_150 Hb_001575_060--Hb_000107_150 Hb_001892_070 Hb_001892_070 Hb_001575_060--Hb_001892_070 Hb_001240_010--Hb_000107_150 Hb_001240_010--Hb_003050_250 Hb_011457_050 Hb_011457_050 Hb_001240_010--Hb_011457_050 Hb_000465_070--Hb_000035_480 Hb_000465_070--Hb_000457_290 Hb_002232_060 Hb_002232_060 Hb_000465_070--Hb_002232_060 Hb_100886_010 Hb_100886_010 Hb_000465_070--Hb_100886_010 Hb_003106_100 Hb_003106_100 Hb_000465_070--Hb_003106_100 Hb_000457_290--Hb_000035_480 Hb_000457_290--Hb_001892_070 Hb_000457_290--Hb_002232_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5776 14.9859 32.4128 36.6766 13.3863 17.965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.8238 69.5608 41.2273 23.9341 61.0624

CAGE analysis