Hb_002503_020

Information

Type -
Description -
Location Contig2503: 5331-6588
Sequence    

Annotation

kegg
ID tcc:TCM_016494
description Phosphatase 2C family protein, putative
nr
ID XP_007040568.1
description Phosphatase 2C family protein, putative [Theobroma cacao]
swissprot
ID Q9SUK9
description Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2
trembl
ID A0A061GDE7
description Phosphatase 2C family protein, putative OS=Theobroma cacao GN=TCM_016494 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable protein phosphatase 2c 55

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26194: 5310-6652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002503_020 0.0 - - Phosphatase 2C family protein, putative [Theobroma cacao]
2 Hb_019113_020 0.0887805391 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
3 Hb_000125_210 0.0957538292 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
4 Hb_161175_010 0.0984090837 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
5 Hb_000733_180 0.1015890785 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
6 Hb_000853_190 0.1061898161 - - mitochondrial carrier protein, putative [Ricinus communis]
7 Hb_000617_200 0.1101860773 - - f-actin capping protein alpha, putative [Ricinus communis]
8 Hb_000962_040 0.1152578703 - - heat shock protein binding protein, putative [Ricinus communis]
9 Hb_000377_150 0.1154790961 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
10 Hb_001946_330 0.1163127166 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
11 Hb_000436_130 0.1173084163 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
12 Hb_000337_050 0.1191108558 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
13 Hb_000959_350 0.1196682419 - - PREDICTED: uncharacterized protein LOC105636607 [Jatropha curcas]
14 Hb_004225_080 0.1207224379 - - -
15 Hb_007416_060 0.1207950411 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
16 Hb_000403_070 0.1212989689 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000175_030 0.1223664883 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
18 Hb_003050_250 0.1227128883 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
19 Hb_002799_070 0.122908155 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
20 Hb_000673_020 0.1243332436 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002503_020 Hb_002503_020 Hb_019113_020 Hb_019113_020 Hb_002503_020--Hb_019113_020 Hb_000125_210 Hb_000125_210 Hb_002503_020--Hb_000125_210 Hb_161175_010 Hb_161175_010 Hb_002503_020--Hb_161175_010 Hb_000733_180 Hb_000733_180 Hb_002503_020--Hb_000733_180 Hb_000853_190 Hb_000853_190 Hb_002503_020--Hb_000853_190 Hb_000617_200 Hb_000617_200 Hb_002503_020--Hb_000617_200 Hb_003050_250 Hb_003050_250 Hb_019113_020--Hb_003050_250 Hb_019113_020--Hb_161175_010 Hb_019113_020--Hb_000125_210 Hb_004125_040 Hb_004125_040 Hb_019113_020--Hb_004125_040 Hb_000318_160 Hb_000318_160 Hb_019113_020--Hb_000318_160 Hb_000673_020 Hb_000673_020 Hb_000125_210--Hb_000673_020 Hb_000125_210--Hb_161175_010 Hb_000096_150 Hb_000096_150 Hb_000125_210--Hb_000096_150 Hb_000125_210--Hb_000318_160 Hb_003349_080 Hb_003349_080 Hb_000125_210--Hb_003349_080 Hb_000175_030 Hb_000175_030 Hb_000125_210--Hb_000175_030 Hb_161175_010--Hb_000175_030 Hb_000705_290 Hb_000705_290 Hb_161175_010--Hb_000705_290 Hb_003849_150 Hb_003849_150 Hb_161175_010--Hb_003849_150 Hb_161175_010--Hb_000673_020 Hb_000309_130 Hb_000309_130 Hb_000733_180--Hb_000309_130 Hb_001013_030 Hb_001013_030 Hb_000733_180--Hb_001013_030 Hb_000436_130 Hb_000436_130 Hb_000733_180--Hb_000436_130 Hb_000928_070 Hb_000928_070 Hb_000733_180--Hb_000928_070 Hb_002677_020 Hb_002677_020 Hb_000733_180--Hb_002677_020 Hb_003124_150 Hb_003124_150 Hb_000733_180--Hb_003124_150 Hb_000853_190--Hb_000436_130 Hb_011512_040 Hb_011512_040 Hb_000853_190--Hb_011512_040 Hb_000962_040 Hb_000962_040 Hb_000853_190--Hb_000962_040 Hb_000614_220 Hb_000614_220 Hb_000853_190--Hb_000614_220 Hb_027654_060 Hb_027654_060 Hb_000853_190--Hb_027654_060 Hb_002871_190 Hb_002871_190 Hb_000853_190--Hb_002871_190 Hb_000329_210 Hb_000329_210 Hb_000617_200--Hb_000329_210 Hb_000617_200--Hb_003050_250 Hb_000617_200--Hb_019113_020 Hb_000617_200--Hb_161175_010 Hb_006442_020 Hb_006442_020 Hb_000617_200--Hb_006442_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.15523 2.86473 6.04302 5.69241 1.42768 5.40584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1598 11.0928 13.6422 4.60363 10.4805

CAGE analysis