Hb_000617_200

Information

Type -
Description -
Location Contig617: 148142-152319
Sequence    

Annotation

kegg
ID rcu:RCOM_1433330
description f-actin capping protein alpha, putative
nr
ID XP_002512432.1
description f-actin capping protein alpha, putative [Ricinus communis]
swissprot
ID O82631
description F-actin-capping protein subunit alpha OS=Arabidopsis thaliana GN=At3g05520 PE=2 SV=2
trembl
ID B9RFB3
description F-actin capping protein alpha, putative OS=Ricinus communis GN=RCOM_1433330 PE=4 SV=1
Gene Ontology
ID GO:0005634
description f-actin-capping protein subunit alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51286: 148144-152197 , PASA_asmbl_51287: 149802-149913 , PASA_asmbl_51288: 148634-148931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_200 0.0 - - f-actin capping protein alpha, putative [Ricinus communis]
2 Hb_000329_210 0.0939301768 - - Golgi snare 12 isoform 1 [Theobroma cacao]
3 Hb_003050_250 0.1057894349 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
4 Hb_019113_020 0.1064796996 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
5 Hb_161175_010 0.1094661542 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
6 Hb_002503_020 0.1101860773 - - Phosphatase 2C family protein, putative [Theobroma cacao]
7 Hb_006442_020 0.1125622411 - - PREDICTED: very-long-chain enoyl-CoA reductase [Jatropha curcas]
8 Hb_003086_080 0.1134658097 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
9 Hb_001946_330 0.1158423677 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
10 Hb_000059_050 0.1202729945 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
11 Hb_004257_010 0.1235840221 - - CMP-sialic acid transporter, putative [Ricinus communis]
12 Hb_008566_030 0.1246089664 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
13 Hb_000853_190 0.1274578106 - - mitochondrial carrier protein, putative [Ricinus communis]
14 Hb_006469_080 0.1287781413 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000337_050 0.1297044839 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
16 Hb_010583_020 0.1302083365 - - PREDICTED: uncharacterized protein LOC105646948 [Jatropha curcas]
17 Hb_002184_090 0.1307064309 - - DNA binding protein, putative [Ricinus communis]
18 Hb_004191_020 0.1316267674 - - PREDICTED: cysteine synthase [Jatropha curcas]
19 Hb_001307_030 0.1319093291 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
20 Hb_024128_020 0.1329662183 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000617_200 Hb_000617_200 Hb_000329_210 Hb_000329_210 Hb_000617_200--Hb_000329_210 Hb_003050_250 Hb_003050_250 Hb_000617_200--Hb_003050_250 Hb_019113_020 Hb_019113_020 Hb_000617_200--Hb_019113_020 Hb_161175_010 Hb_161175_010 Hb_000617_200--Hb_161175_010 Hb_002503_020 Hb_002503_020 Hb_000617_200--Hb_002503_020 Hb_006442_020 Hb_006442_020 Hb_000617_200--Hb_006442_020 Hb_076233_040 Hb_076233_040 Hb_000329_210--Hb_076233_040 Hb_001307_030 Hb_001307_030 Hb_000329_210--Hb_001307_030 Hb_004257_010 Hb_004257_010 Hb_000329_210--Hb_004257_010 Hb_002184_090 Hb_002184_090 Hb_000329_210--Hb_002184_090 Hb_024128_020 Hb_024128_020 Hb_000329_210--Hb_024128_020 Hb_003050_250--Hb_019113_020 Hb_004125_040 Hb_004125_040 Hb_003050_250--Hb_004125_040 Hb_001575_060 Hb_001575_060 Hb_003050_250--Hb_001575_060 Hb_001240_010 Hb_001240_010 Hb_003050_250--Hb_001240_010 Hb_001728_060 Hb_001728_060 Hb_003050_250--Hb_001728_060 Hb_000403_070 Hb_000403_070 Hb_003050_250--Hb_000403_070 Hb_019113_020--Hb_161175_010 Hb_019113_020--Hb_002503_020 Hb_000125_210 Hb_000125_210 Hb_019113_020--Hb_000125_210 Hb_019113_020--Hb_004125_040 Hb_000318_160 Hb_000318_160 Hb_019113_020--Hb_000318_160 Hb_161175_010--Hb_000125_210 Hb_000175_030 Hb_000175_030 Hb_161175_010--Hb_000175_030 Hb_000705_290 Hb_000705_290 Hb_161175_010--Hb_000705_290 Hb_003849_150 Hb_003849_150 Hb_161175_010--Hb_003849_150 Hb_000673_020 Hb_000673_020 Hb_161175_010--Hb_000673_020 Hb_002503_020--Hb_000125_210 Hb_002503_020--Hb_161175_010 Hb_000733_180 Hb_000733_180 Hb_002503_020--Hb_000733_180 Hb_000853_190 Hb_000853_190 Hb_002503_020--Hb_000853_190 Hb_000983_040 Hb_000983_040 Hb_006442_020--Hb_000983_040 Hb_006442_020--Hb_000705_290 Hb_006442_020--Hb_161175_010 Hb_002221_070 Hb_002221_070 Hb_006442_020--Hb_002221_070 Hb_011249_020 Hb_011249_020 Hb_006442_020--Hb_011249_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2275 5.67619 23.2132 40.6783 12.5982 23.6073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.1372 39.2217 59.379 14.2018 47.8505

CAGE analysis