Hb_000983_040

Information

Type -
Description -
Location Contig983: 14131-20950
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa019781mg
description hypothetical protein
nr
ID XP_012071929.1
description PREDICTED: transmembrane protein 136 [Jatropha curcas]
swissprot
ID Q0VD42
description Transmembrane protein 136 OS=Bos taurus GN=TMEM136 PE=2 SV=1
trembl
ID A0A067KQQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04481 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 136

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64444: 14132-20884
cDNA
(Sanger)
(ID:Location)		 003_P18.ab1: 14322-20887

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000983_040 0.0 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]
2 Hb_054132_010 0.0739294052 - - PREDICTED: transmembrane protein 136-like isoform X2 [Pyrus x bretschneideri]
3 Hb_006442_020 0.0973371512 - - PREDICTED: very-long-chain enoyl-CoA reductase [Jatropha curcas]
4 Hb_004191_020 0.1149010864 - - PREDICTED: cysteine synthase [Jatropha curcas]
5 Hb_005144_050 0.1270300683 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
6 Hb_000337_050 0.1334073053 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
7 Hb_000617_200 0.1334673556 - - f-actin capping protein alpha, putative [Ricinus communis]
8 Hb_010583_020 0.1336429943 - - PREDICTED: uncharacterized protein LOC105646948 [Jatropha curcas]
9 Hb_002221_070 0.134152709 - - beta-glucanase, putative [Ricinus communis]
10 Hb_008790_030 0.1375867174 - - PREDICTED: probable magnesium transporter NIPA9 [Jatropha curcas]
11 Hb_002496_020 0.1381810405 - - DNA binding protein, putative [Ricinus communis]
12 Hb_003086_080 0.1416501239 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
13 Hb_000329_210 0.1419069811 - - Golgi snare 12 isoform 1 [Theobroma cacao]
14 Hb_003050_250 0.1425259612 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
15 Hb_011360_070 0.1430570712 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
16 Hb_001006_020 0.1453751488 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
17 Hb_018133_090 0.1464519168 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000300_660 0.1465326686 - - unknown [Glycine max]
19 Hb_000289_110 0.1468905718 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
20 Hb_002518_210 0.1471713734 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000983_040 Hb_000983_040 Hb_054132_010 Hb_054132_010 Hb_000983_040--Hb_054132_010 Hb_006442_020 Hb_006442_020 Hb_000983_040--Hb_006442_020 Hb_004191_020 Hb_004191_020 Hb_000983_040--Hb_004191_020 Hb_005144_050 Hb_005144_050 Hb_000983_040--Hb_005144_050 Hb_000337_050 Hb_000337_050 Hb_000983_040--Hb_000337_050 Hb_000617_200 Hb_000617_200 Hb_000983_040--Hb_000617_200 Hb_054132_010--Hb_006442_020 Hb_054132_010--Hb_004191_020 Hb_079483_020 Hb_079483_020 Hb_054132_010--Hb_079483_020 Hb_004619_080 Hb_004619_080 Hb_054132_010--Hb_004619_080 Hb_002221_070 Hb_002221_070 Hb_054132_010--Hb_002221_070 Hb_000705_290 Hb_000705_290 Hb_006442_020--Hb_000705_290 Hb_006442_020--Hb_000617_200 Hb_161175_010 Hb_161175_010 Hb_006442_020--Hb_161175_010 Hb_006442_020--Hb_002221_070 Hb_011249_020 Hb_011249_020 Hb_006442_020--Hb_011249_020 Hb_002496_020 Hb_002496_020 Hb_004191_020--Hb_002496_020 Hb_000335_030 Hb_000335_030 Hb_004191_020--Hb_000335_030 Hb_006478_020 Hb_006478_020 Hb_004191_020--Hb_006478_020 Hb_001971_010 Hb_001971_010 Hb_004191_020--Hb_001971_010 Hb_008790_030 Hb_008790_030 Hb_004191_020--Hb_008790_030 Hb_024128_020 Hb_024128_020 Hb_004191_020--Hb_024128_020 Hb_001366_180 Hb_001366_180 Hb_005144_050--Hb_001366_180 Hb_025098_010 Hb_025098_010 Hb_005144_050--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_005144_050--Hb_185255_010 Hb_002289_080 Hb_002289_080 Hb_005144_050--Hb_002289_080 Hb_000289_110 Hb_000289_110 Hb_005144_050--Hb_000289_110 Hb_005144_050--Hb_024128_020 Hb_000337_050--Hb_000289_110 Hb_018133_090 Hb_018133_090 Hb_000337_050--Hb_018133_090 Hb_003086_080 Hb_003086_080 Hb_000337_050--Hb_003086_080 Hb_000337_050--Hb_001366_180 Hb_000337_050--Hb_005144_050 Hb_003020_260 Hb_003020_260 Hb_000337_050--Hb_003020_260 Hb_000329_210 Hb_000329_210 Hb_000617_200--Hb_000329_210 Hb_003050_250 Hb_003050_250 Hb_000617_200--Hb_003050_250 Hb_019113_020 Hb_019113_020 Hb_000617_200--Hb_019113_020 Hb_000617_200--Hb_161175_010 Hb_002503_020 Hb_002503_020 Hb_000617_200--Hb_002503_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.07294 0.68316 2.90423 8.70557 2.9456 6.56753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.64946 8.67635 7.14622 1.87723 10.1987

CAGE analysis