Hb_079483_020

Information

Type -
Description -
Location Contig79483: 12438-17428
Sequence    

Annotation

kegg
ID rcu:RCOM_1174250
description hydrolase, hydrolyzing O-glycosyl compounds, putative
nr
ID XP_012088283.1
description PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X2 [Jatropha curcas]
swissprot
ID Q7Y223
description Mannan endo-1,4-beta-mannosidase 2 OS=Arabidopsis thaliana GN=MAN2 PE=2 SV=1
trembl
ID A0A067JJP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25784 PE=3 SV=1
Gene Ontology
ID GO:0004553
description mannan endo- -beta-mannosidase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58492: 12489-17824 , PASA_asmbl_58493: 14355-14650 , PASA_asmbl_58494: 15736-16045
cDNA
(Sanger)
(ID:Location)		 005_M24.ab1: 17052-17824

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079483_020 0.0 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X2 [Jatropha curcas]
2 Hb_004116_020 0.1448274814 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
3 Hb_003103_010 0.1606132714 - - conserved hypothetical protein [Ricinus communis]
4 Hb_054132_010 0.1614295625 - - PREDICTED: transmembrane protein 136-like isoform X2 [Pyrus x bretschneideri]
5 Hb_002154_110 0.163138386 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
6 Hb_001195_070 0.1641912726 - - PREDICTED: protein RER1B-like [Jatropha curcas]
7 Hb_113818_010 0.1655988998 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
8 Hb_005144_010 0.1674131603 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
9 Hb_003141_070 0.1682831916 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
10 Hb_000983_040 0.1688125401 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]
11 Hb_001754_080 0.1694917525 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
12 Hb_006442_020 0.1703740277 - - PREDICTED: very-long-chain enoyl-CoA reductase [Jatropha curcas]
13 Hb_009661_030 0.1724202332 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
14 Hb_000826_090 0.17400807 - - PREDICTED: cationic peroxidase 1-like [Populus euphratica]
15 Hb_011671_080 0.1745981588 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
16 Hb_004129_140 0.1765118531 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Jatropha curcas]
17 Hb_003911_020 0.1766229826 - - PREDICTED: uncharacterized protein LOC105121332 [Populus euphratica]
18 Hb_002304_040 0.1768672217 - - PREDICTED: uncharacterized protein LOC105649623 isoform X2 [Jatropha curcas]
19 Hb_185255_010 0.1796624798 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
20 Hb_001489_110 0.1819703714 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]

Gene co-expression network

sample Hb_079483_020 Hb_079483_020 Hb_004116_020 Hb_004116_020 Hb_079483_020--Hb_004116_020 Hb_003103_010 Hb_003103_010 Hb_079483_020--Hb_003103_010 Hb_054132_010 Hb_054132_010 Hb_079483_020--Hb_054132_010 Hb_002154_110 Hb_002154_110 Hb_079483_020--Hb_002154_110 Hb_001195_070 Hb_001195_070 Hb_079483_020--Hb_001195_070 Hb_113818_010 Hb_113818_010 Hb_079483_020--Hb_113818_010 Hb_009661_030 Hb_009661_030 Hb_004116_020--Hb_009661_030 Hb_003935_060 Hb_003935_060 Hb_004116_020--Hb_003935_060 Hb_000240_030 Hb_000240_030 Hb_004116_020--Hb_000240_030 Hb_002960_130 Hb_002960_130 Hb_004116_020--Hb_002960_130 Hb_004116_020--Hb_113818_010 Hb_019181_030 Hb_019181_030 Hb_004116_020--Hb_019181_030 Hb_003103_010--Hb_002154_110 Hb_008642_030 Hb_008642_030 Hb_003103_010--Hb_008642_030 Hb_008206_100 Hb_008206_100 Hb_003103_010--Hb_008206_100 Hb_006573_290 Hb_006573_290 Hb_003103_010--Hb_006573_290 Hb_011249_020 Hb_011249_020 Hb_003103_010--Hb_011249_020 Hb_003103_010--Hb_001195_070 Hb_000983_040 Hb_000983_040 Hb_054132_010--Hb_000983_040 Hb_006442_020 Hb_006442_020 Hb_054132_010--Hb_006442_020 Hb_004191_020 Hb_004191_020 Hb_054132_010--Hb_004191_020 Hb_004619_080 Hb_004619_080 Hb_054132_010--Hb_004619_080 Hb_002221_070 Hb_002221_070 Hb_054132_010--Hb_002221_070 Hb_002154_110--Hb_008642_030 Hb_000016_170 Hb_000016_170 Hb_002154_110--Hb_000016_170 Hb_000563_200 Hb_000563_200 Hb_002154_110--Hb_000563_200 Hb_002154_110--Hb_006573_290 Hb_145880_020 Hb_145880_020 Hb_002154_110--Hb_145880_020 Hb_008699_030 Hb_008699_030 Hb_001195_070--Hb_008699_030 Hb_015675_030 Hb_015675_030 Hb_001195_070--Hb_015675_030 Hb_000175_260 Hb_000175_260 Hb_001195_070--Hb_000175_260 Hb_001584_240 Hb_001584_240 Hb_001195_070--Hb_001584_240 Hb_000671_130 Hb_000671_130 Hb_001195_070--Hb_000671_130 Hb_000189_480 Hb_000189_480 Hb_113818_010--Hb_000189_480 Hb_015934_120 Hb_015934_120 Hb_113818_010--Hb_015934_120 Hb_001504_030 Hb_001504_030 Hb_113818_010--Hb_001504_030 Hb_002289_060 Hb_002289_060 Hb_113818_010--Hb_002289_060 Hb_000244_180 Hb_000244_180 Hb_113818_010--Hb_000244_180 Hb_113818_010--Hb_009661_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.8859 7.42469 14.0583 101.604 14.6077 21.8604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.4672 58.1796 38.0876 7.85576 52.2248

CAGE analysis