Hb_004116_020

Information

Type -
Description -
Location Contig4116: 33164-36603
Sequence    

Annotation

kegg
ID rcu:RCOM_0593170
description fad NAD binding oxidoreductases, putative
nr
ID XP_002526899.1
description fad NAD binding oxidoreductases, putative [Ricinus communis]
swissprot
ID P59234
description Protein yippee-like OS=Solanum tuberosum PE=2 SV=1
trembl
ID B9SLN0
description Protein yippee-like OS=Ricinus communis GN=RCOM_0593170 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40707: 35407-36415 , PASA_asmbl_40708: 33272-36843 , PASA_asmbl_40710: 33903-34798 , PASA_asmbl_40711: 33257-36827
cDNA
(Sanger)
(ID:Location)		 001_N12.ab1: 33272-36843 , 006_E20.ab1: 33348-36843 , 042_M19.ab1: 33274-36843

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_020 0.0 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
2 Hb_009661_030 0.1222467535 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
3 Hb_003935_060 0.1238437348 - - PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
4 Hb_000240_030 0.132532022 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002960_130 0.1330256947 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
6 Hb_113818_010 0.1374782764 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
7 Hb_019181_030 0.1380725319 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
8 Hb_002174_040 0.1384198556 - - DNAJ heat shock family protein [Theobroma cacao]
9 Hb_008147_090 0.1402043711 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004032_030 0.1403684172 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
11 Hb_079483_020 0.1448274814 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X2 [Jatropha curcas]
12 Hb_001951_130 0.1452942754 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
13 Hb_008566_040 0.1488193257 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
14 Hb_000622_350 0.1504679913 - - PREDICTED: protein ABIL1 [Jatropha curcas]
15 Hb_000127_140 0.1535645277 - - transporter-related family protein [Populus trichocarpa]
16 Hb_000721_030 0.1538938449 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
17 Hb_001609_040 0.1558262703 - - hypothetical protein POPTR_0017s05650g [Populus trichocarpa]
18 Hb_083380_020 0.1561038516 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
19 Hb_002184_090 0.1563193806 - - DNA binding protein, putative [Ricinus communis]
20 Hb_004093_020 0.1563821247 - - Calcium-binding EF-hand family protein [Theobroma cacao]

Gene co-expression network

sample Hb_004116_020 Hb_004116_020 Hb_009661_030 Hb_009661_030 Hb_004116_020--Hb_009661_030 Hb_003935_060 Hb_003935_060 Hb_004116_020--Hb_003935_060 Hb_000240_030 Hb_000240_030 Hb_004116_020--Hb_000240_030 Hb_002960_130 Hb_002960_130 Hb_004116_020--Hb_002960_130 Hb_113818_010 Hb_113818_010 Hb_004116_020--Hb_113818_010 Hb_019181_030 Hb_019181_030 Hb_004116_020--Hb_019181_030 Hb_000359_310 Hb_000359_310 Hb_009661_030--Hb_000359_310 Hb_005800_030 Hb_005800_030 Hb_009661_030--Hb_005800_030 Hb_001104_130 Hb_001104_130 Hb_009661_030--Hb_001104_130 Hb_004129_140 Hb_004129_140 Hb_009661_030--Hb_004129_140 Hb_003878_200 Hb_003878_200 Hb_009661_030--Hb_003878_200 Hb_009661_030--Hb_019181_030 Hb_001504_030 Hb_001504_030 Hb_003935_060--Hb_001504_030 Hb_000365_130 Hb_000365_130 Hb_003935_060--Hb_000365_130 Hb_001250_070 Hb_001250_070 Hb_003935_060--Hb_001250_070 Hb_000721_030 Hb_000721_030 Hb_003935_060--Hb_000721_030 Hb_001102_020 Hb_001102_020 Hb_003935_060--Hb_001102_020 Hb_000359_290 Hb_000359_290 Hb_003935_060--Hb_000359_290 Hb_000590_120 Hb_000590_120 Hb_000240_030--Hb_000590_120 Hb_066842_010 Hb_066842_010 Hb_000240_030--Hb_066842_010 Hb_006683_070 Hb_006683_070 Hb_000240_030--Hb_006683_070 Hb_011249_020 Hb_011249_020 Hb_000240_030--Hb_011249_020 Hb_002392_010 Hb_002392_010 Hb_000240_030--Hb_002392_010 Hb_002110_100 Hb_002110_100 Hb_000240_030--Hb_002110_100 Hb_002960_130--Hb_019181_030 Hb_001747_030 Hb_001747_030 Hb_002960_130--Hb_001747_030 Hb_001208_040 Hb_001208_040 Hb_002960_130--Hb_001208_040 Hb_000683_100 Hb_000683_100 Hb_002960_130--Hb_000683_100 Hb_001584_240 Hb_001584_240 Hb_002960_130--Hb_001584_240 Hb_000217_020 Hb_000217_020 Hb_002960_130--Hb_000217_020 Hb_000189_480 Hb_000189_480 Hb_113818_010--Hb_000189_480 Hb_015934_120 Hb_015934_120 Hb_113818_010--Hb_015934_120 Hb_113818_010--Hb_001504_030 Hb_002289_060 Hb_002289_060 Hb_113818_010--Hb_002289_060 Hb_000244_180 Hb_000244_180 Hb_113818_010--Hb_000244_180 Hb_113818_010--Hb_009661_030 Hb_013394_050 Hb_013394_050 Hb_019181_030--Hb_013394_050 Hb_000152_600 Hb_000152_600 Hb_019181_030--Hb_000152_600 Hb_007390_020 Hb_007390_020 Hb_019181_030--Hb_007390_020 Hb_010368_050 Hb_010368_050 Hb_019181_030--Hb_010368_050 Hb_001609_040 Hb_001609_040 Hb_019181_030--Hb_001609_040 Hb_000197_020 Hb_000197_020 Hb_019181_030--Hb_000197_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8124 1.91047 13.4408 37.83 4.72765 9.80907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1573 12.8529 11.661 4.55502 17.0188

CAGE analysis