Hb_000217_020

Information

Type -
Description -
Location Contig217: 39112-50599
Sequence    

Annotation

kegg
ID rcu:RCOM_1540540
description AMME syndrome candidateprotein 1 protein, putative
nr
ID XP_002515762.1
description AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]
swissprot
ID Q9ZVJ2
description Uncharacterized protein At2g38710 OS=Arabidopsis thaliana GN=At2g38710 PE=2 SV=1
trembl
ID B9RPU3
description AMME syndrome candidateprotein 1 protein, putative OS=Ricinus communis GN=RCOM_1540540 PE=4 SV=1
Gene Ontology
ID GO:0005829
description amme syndrome candidateprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22398: 24108-50534
cDNA
(Sanger)
(ID:Location)		 003_A17.ab1: 24359-50534

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000217_020 0.0 - - AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]
2 Hb_000392_340 0.1171292388 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
3 Hb_019181_030 0.1182619694 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
4 Hb_001951_130 0.1224568848 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
5 Hb_002960_130 0.1321369643 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
6 Hb_004032_030 0.1336624541 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
7 Hb_001208_040 0.136698602 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
8 Hb_111985_110 0.1367587675 - - thioredoxin H-type 3 [Hevea brasiliensis]
9 Hb_021409_080 0.1394351895 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
10 Hb_010368_050 0.1418063035 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
11 Hb_005054_080 0.143146591 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
12 Hb_048476_060 0.1440856166 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
13 Hb_000244_170 0.1441906286 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
14 Hb_007894_010 0.1465065658 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
15 Hb_000127_140 0.1466255129 - - transporter-related family protein [Populus trichocarpa]
16 Hb_000110_120 0.1471525051 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
17 Hb_083380_020 0.1490268556 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
18 Hb_004230_020 0.1495445173 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
19 Hb_004093_020 0.1516611879 - - Calcium-binding EF-hand family protein [Theobroma cacao]
20 Hb_004176_070 0.152798326 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000217_020 Hb_000217_020 Hb_000392_340 Hb_000392_340 Hb_000217_020--Hb_000392_340 Hb_019181_030 Hb_019181_030 Hb_000217_020--Hb_019181_030 Hb_001951_130 Hb_001951_130 Hb_000217_020--Hb_001951_130 Hb_002960_130 Hb_002960_130 Hb_000217_020--Hb_002960_130 Hb_004032_030 Hb_004032_030 Hb_000217_020--Hb_004032_030 Hb_001208_040 Hb_001208_040 Hb_000217_020--Hb_001208_040 Hb_005054_080 Hb_005054_080 Hb_000392_340--Hb_005054_080 Hb_002681_200 Hb_002681_200 Hb_000392_340--Hb_002681_200 Hb_000392_340--Hb_001951_130 Hb_000127_140 Hb_000127_140 Hb_000392_340--Hb_000127_140 Hb_180343_010 Hb_180343_010 Hb_000392_340--Hb_180343_010 Hb_000832_190 Hb_000832_190 Hb_000392_340--Hb_000832_190 Hb_013394_050 Hb_013394_050 Hb_019181_030--Hb_013394_050 Hb_000152_600 Hb_000152_600 Hb_019181_030--Hb_000152_600 Hb_007390_020 Hb_007390_020 Hb_019181_030--Hb_007390_020 Hb_010368_050 Hb_010368_050 Hb_019181_030--Hb_010368_050 Hb_001609_040 Hb_001609_040 Hb_019181_030--Hb_001609_040 Hb_000197_020 Hb_000197_020 Hb_019181_030--Hb_000197_020 Hb_001951_130--Hb_000127_140 Hb_001951_130--Hb_010368_050 Hb_001951_130--Hb_005054_080 Hb_008147_090 Hb_008147_090 Hb_001951_130--Hb_008147_090 Hb_000062_330 Hb_000062_330 Hb_001951_130--Hb_000062_330 Hb_002960_130--Hb_019181_030 Hb_001747_030 Hb_001747_030 Hb_002960_130--Hb_001747_030 Hb_002960_130--Hb_001208_040 Hb_000683_100 Hb_000683_100 Hb_002960_130--Hb_000683_100 Hb_001584_240 Hb_001584_240 Hb_002960_130--Hb_001584_240 Hb_002298_030 Hb_002298_030 Hb_004032_030--Hb_002298_030 Hb_004032_030--Hb_005054_080 Hb_005695_120 Hb_005695_120 Hb_004032_030--Hb_005695_120 Hb_000417_100 Hb_000417_100 Hb_004032_030--Hb_000417_100 Hb_004032_030--Hb_000392_340 Hb_003929_270 Hb_003929_270 Hb_004032_030--Hb_003929_270 Hb_001208_030 Hb_001208_030 Hb_001208_040--Hb_001208_030 Hb_000016_060 Hb_000016_060 Hb_001208_040--Hb_000016_060 Hb_006452_110 Hb_006452_110 Hb_001208_040--Hb_006452_110 Hb_001208_040--Hb_007390_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.0124 7.74039 47.0775 110.301 13.0618 16.1769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.5878 41.9046 28.5204 24.3901 16.3369

CAGE analysis