Hb_004619_080

Information

Type -
Description -
Location Contig4619: 62853-65180
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011369mg
description hypothetical protein
nr
ID XP_007225813.1
description hypothetical protein PRUPE_ppa011369mg [Prunus persica]
swissprot
ID Q6IDL4
description Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana GN=At1g09580 PE=1 SV=1
trembl
ID M5XLQ3
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011369mg PE=3 SV=1
Gene Ontology
ID GO:0016021
description transmembrane emp24 domain-containing protein p24delta3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43763: 62694-65220
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004619_080 0.0 - - hypothetical protein PRUPE_ppa011369mg [Prunus persica]
2 Hb_005847_060 0.0943099526 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
3 Hb_001348_180 0.095586665 - - PREDICTED: TLC domain-containing protein 2 [Jatropha curcas]
4 Hb_002168_060 0.0968241631 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
5 Hb_005054_060 0.0986034269 - - PREDICTED: syntaxin-81 [Jatropha curcas]
6 Hb_010583_020 0.0999588715 - - PREDICTED: uncharacterized protein LOC105646948 [Jatropha curcas]
7 Hb_013726_020 0.1009301091 - - ara4-interacting protein, putative [Ricinus communis]
8 Hb_004440_020 0.1029550787 - - AP-3 complex subunit sigma-1, putative [Ricinus communis]
9 Hb_009694_010 0.1054023322 - - conserved hypothetical protein [Ricinus communis]
10 Hb_163950_030 0.1058609101 - - PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
11 Hb_000465_090 0.1092551014 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
12 Hb_010361_010 0.1095907832 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
13 Hb_004060_020 0.1098281169 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_004191_020 0.1107574269 - - PREDICTED: cysteine synthase [Jatropha curcas]
15 Hb_000110_310 0.1126379925 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
16 Hb_001575_070 0.1133745195 - - PREDICTED: uncharacterized protein LOC105639885 [Jatropha curcas]
17 Hb_002235_250 0.1140097403 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
18 Hb_004837_030 0.1141891877 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
19 Hb_011716_130 0.1151547403 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
20 Hb_003077_020 0.1160367762 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_004619_080 Hb_004619_080 Hb_005847_060 Hb_005847_060 Hb_004619_080--Hb_005847_060 Hb_001348_180 Hb_001348_180 Hb_004619_080--Hb_001348_180 Hb_002168_060 Hb_002168_060 Hb_004619_080--Hb_002168_060 Hb_005054_060 Hb_005054_060 Hb_004619_080--Hb_005054_060 Hb_010583_020 Hb_010583_020 Hb_004619_080--Hb_010583_020 Hb_013726_020 Hb_013726_020 Hb_004619_080--Hb_013726_020 Hb_011716_130 Hb_011716_130 Hb_005847_060--Hb_011716_130 Hb_001662_150 Hb_001662_150 Hb_005847_060--Hb_001662_150 Hb_001922_170 Hb_001922_170 Hb_005847_060--Hb_001922_170 Hb_002811_130 Hb_002811_130 Hb_005847_060--Hb_002811_130 Hb_001157_020 Hb_001157_020 Hb_005847_060--Hb_001157_020 Hb_001579_270 Hb_001579_270 Hb_005847_060--Hb_001579_270 Hb_001959_070 Hb_001959_070 Hb_001348_180--Hb_001959_070 Hb_004837_030 Hb_004837_030 Hb_001348_180--Hb_004837_030 Hb_163950_030 Hb_163950_030 Hb_001348_180--Hb_163950_030 Hb_000173_290 Hb_000173_290 Hb_001348_180--Hb_000173_290 Hb_007811_030 Hb_007811_030 Hb_001348_180--Hb_007811_030 Hb_000465_090 Hb_000465_090 Hb_002168_060--Hb_000465_090 Hb_001012_010 Hb_001012_010 Hb_002168_060--Hb_001012_010 Hb_003057_090 Hb_003057_090 Hb_002168_060--Hb_003057_090 Hb_002168_060--Hb_005054_060 Hb_002477_300 Hb_002477_300 Hb_002168_060--Hb_002477_300 Hb_000815_320 Hb_000815_320 Hb_005054_060--Hb_000815_320 Hb_004096_090 Hb_004096_090 Hb_005054_060--Hb_004096_090 Hb_005054_060--Hb_003057_090 Hb_009694_010 Hb_009694_010 Hb_005054_060--Hb_009694_010 Hb_001821_010 Hb_001821_010 Hb_005054_060--Hb_001821_010 Hb_005054_060--Hb_000465_090 Hb_004191_020 Hb_004191_020 Hb_010583_020--Hb_004191_020 Hb_010361_010 Hb_010361_010 Hb_010583_020--Hb_010361_010 Hb_011021_020 Hb_011021_020 Hb_010583_020--Hb_011021_020 Hb_008790_030 Hb_008790_030 Hb_010583_020--Hb_008790_030 Hb_010583_020--Hb_005847_060 Hb_000656_040 Hb_000656_040 Hb_013726_020--Hb_000656_040 Hb_002835_240 Hb_002835_240 Hb_013726_020--Hb_002835_240 Hb_000347_540 Hb_000347_540 Hb_013726_020--Hb_000347_540 Hb_013726_020--Hb_000815_320 Hb_002998_060 Hb_002998_060 Hb_013726_020--Hb_002998_060 Hb_013726_020--Hb_002168_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.98163 0.737417 6.29767 5.21699 4.87544 6.51042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.07387 7.1629 5.67355 2.06037 5.93523

CAGE analysis