Hb_010583_020

Information

Type -
Description -
Location Contig10583: 22907-26250
Sequence    

Annotation

kegg
ID rcu:RCOM_1175420
description prenyl-dependent CAAX protease, putative
nr
ID XP_012088299.1
description PREDICTED: uncharacterized protein LOC105646948 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JX89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25801 PE=4 SV=1
Gene Ontology
ID GO:0016020
description prenyl-dependent caax

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01912: 22951-26239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010583_020 0.0 - - PREDICTED: uncharacterized protein LOC105646948 [Jatropha curcas]
2 Hb_004191_020 0.0990293648 - - PREDICTED: cysteine synthase [Jatropha curcas]
3 Hb_004619_080 0.0999588715 - - hypothetical protein PRUPE_ppa011369mg [Prunus persica]
4 Hb_010361_010 0.1045183984 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
5 Hb_011021_020 0.1104599646 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
6 Hb_008790_030 0.1111764629 - - PREDICTED: probable magnesium transporter NIPA9 [Jatropha curcas]
7 Hb_005847_060 0.1145747891 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
8 Hb_001006_020 0.1148901404 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
9 Hb_024128_020 0.1173148024 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
10 Hb_000329_210 0.119183537 - - Golgi snare 12 isoform 1 [Theobroma cacao]
11 Hb_000421_220 0.1209223875 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
12 Hb_021576_030 0.1226484584 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
13 Hb_008554_070 0.1254536792 - - PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]
14 Hb_003050_250 0.1262937464 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
15 Hb_011716_130 0.1265011493 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
16 Hb_002408_020 0.1290513473 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
17 Hb_004125_040 0.1294927748 - - -
18 Hb_028872_080 0.1298909558 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
19 Hb_000617_200 0.1302083365 - - f-actin capping protein alpha, putative [Ricinus communis]
20 Hb_116894_020 0.130590976 - - hypothetical protein POPTR_0008s07660g [Populus trichocarpa]

Gene co-expression network

sample Hb_010583_020 Hb_010583_020 Hb_004191_020 Hb_004191_020 Hb_010583_020--Hb_004191_020 Hb_004619_080 Hb_004619_080 Hb_010583_020--Hb_004619_080 Hb_010361_010 Hb_010361_010 Hb_010583_020--Hb_010361_010 Hb_011021_020 Hb_011021_020 Hb_010583_020--Hb_011021_020 Hb_008790_030 Hb_008790_030 Hb_010583_020--Hb_008790_030 Hb_005847_060 Hb_005847_060 Hb_010583_020--Hb_005847_060 Hb_002496_020 Hb_002496_020 Hb_004191_020--Hb_002496_020 Hb_000335_030 Hb_000335_030 Hb_004191_020--Hb_000335_030 Hb_006478_020 Hb_006478_020 Hb_004191_020--Hb_006478_020 Hb_001971_010 Hb_001971_010 Hb_004191_020--Hb_001971_010 Hb_004191_020--Hb_008790_030 Hb_024128_020 Hb_024128_020 Hb_004191_020--Hb_024128_020 Hb_004619_080--Hb_005847_060 Hb_001348_180 Hb_001348_180 Hb_004619_080--Hb_001348_180 Hb_002168_060 Hb_002168_060 Hb_004619_080--Hb_002168_060 Hb_005054_060 Hb_005054_060 Hb_004619_080--Hb_005054_060 Hb_013726_020 Hb_013726_020 Hb_004619_080--Hb_013726_020 Hb_000329_200 Hb_000329_200 Hb_010361_010--Hb_000329_200 Hb_000566_120 Hb_000566_120 Hb_010361_010--Hb_000566_120 Hb_024650_070 Hb_024650_070 Hb_010361_010--Hb_024650_070 Hb_000599_250 Hb_000599_250 Hb_010361_010--Hb_000599_250 Hb_004934_100 Hb_004934_100 Hb_010361_010--Hb_004934_100 Hb_000045_310 Hb_000045_310 Hb_010361_010--Hb_000045_310 Hb_011021_020--Hb_002496_020 Hb_011021_020--Hb_005847_060 Hb_000959_030 Hb_000959_030 Hb_011021_020--Hb_000959_030 Hb_011021_020--Hb_004191_020 Hb_000193_270 Hb_000193_270 Hb_011021_020--Hb_000193_270 Hb_000224_160 Hb_000224_160 Hb_011021_020--Hb_000224_160 Hb_000415_040 Hb_000415_040 Hb_008790_030--Hb_000415_040 Hb_000331_200 Hb_000331_200 Hb_008790_030--Hb_000331_200 Hb_019762_020 Hb_019762_020 Hb_008790_030--Hb_019762_020 Hb_000173_290 Hb_000173_290 Hb_008790_030--Hb_000173_290 Hb_008790_030--Hb_024128_020 Hb_011716_130 Hb_011716_130 Hb_005847_060--Hb_011716_130 Hb_001662_150 Hb_001662_150 Hb_005847_060--Hb_001662_150 Hb_001922_170 Hb_001922_170 Hb_005847_060--Hb_001922_170 Hb_002811_130 Hb_002811_130 Hb_005847_060--Hb_002811_130 Hb_001157_020 Hb_001157_020 Hb_005847_060--Hb_001157_020 Hb_001579_270 Hb_001579_270 Hb_005847_060--Hb_001579_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.55117 1.50807 9.91215 11.7627 10.7209 13.7843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3696 16.0628 15.2185 5.60078 15.5108

CAGE analysis