Hb_054132_010

Information

Type -
Description -
Location Contig54132: 173-580
Sequence    

Annotation

kegg
ID pxb:103966857
description transmembrane protein 136-like
nr
ID XP_009378347.1
description PREDICTED: transmembrane protein 136-like isoform X2 [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID M1B8X7
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015428 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 136-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47875: 186-471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054132_010 0.0 - - PREDICTED: transmembrane protein 136-like isoform X2 [Pyrus x bretschneideri]
2 Hb_000983_040 0.0739294052 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]
3 Hb_006442_020 0.1443058588 - - PREDICTED: very-long-chain enoyl-CoA reductase [Jatropha curcas]
4 Hb_004191_020 0.1612556621 - - PREDICTED: cysteine synthase [Jatropha curcas]
5 Hb_079483_020 0.1614295625 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X2 [Jatropha curcas]
6 Hb_004619_080 0.1651780908 - - hypothetical protein PRUPE_ppa011369mg [Prunus persica]
7 Hb_002221_070 0.1684894295 - - beta-glucanase, putative [Ricinus communis]
8 Hb_003497_040 0.169030496 - - ATP binding protein, putative [Ricinus communis]
9 Hb_001439_200 0.1714399399 - - Transmembrane protein Tmp21 precursor, putative [Ricinus communis]
10 Hb_002518_210 0.1715580035 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
11 Hb_010583_020 0.1717219651 - - PREDICTED: uncharacterized protein LOC105646948 [Jatropha curcas]
12 Hb_008790_030 0.1726363859 - - PREDICTED: probable magnesium transporter NIPA9 [Jatropha curcas]
13 Hb_005144_050 0.1737844802 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
14 Hb_002496_020 0.1751533031 - - DNA binding protein, putative [Ricinus communis]
15 Hb_003086_080 0.1754098403 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
16 Hb_000069_670 0.1756704809 - - PREDICTED: uncharacterized protein LOC105642887 [Jatropha curcas]
17 Hb_002343_060 0.1773351252 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
18 Hb_024758_010 0.1787023318 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
19 Hb_002304_040 0.179024086 - - PREDICTED: uncharacterized protein LOC105649623 isoform X2 [Jatropha curcas]
20 Hb_000085_400 0.1794022537 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]

Gene co-expression network

sample Hb_054132_010 Hb_054132_010 Hb_000983_040 Hb_000983_040 Hb_054132_010--Hb_000983_040 Hb_006442_020 Hb_006442_020 Hb_054132_010--Hb_006442_020 Hb_004191_020 Hb_004191_020 Hb_054132_010--Hb_004191_020 Hb_079483_020 Hb_079483_020 Hb_054132_010--Hb_079483_020 Hb_004619_080 Hb_004619_080 Hb_054132_010--Hb_004619_080 Hb_002221_070 Hb_002221_070 Hb_054132_010--Hb_002221_070 Hb_000983_040--Hb_006442_020 Hb_000983_040--Hb_004191_020 Hb_005144_050 Hb_005144_050 Hb_000983_040--Hb_005144_050 Hb_000337_050 Hb_000337_050 Hb_000983_040--Hb_000337_050 Hb_000617_200 Hb_000617_200 Hb_000983_040--Hb_000617_200 Hb_000705_290 Hb_000705_290 Hb_006442_020--Hb_000705_290 Hb_006442_020--Hb_000617_200 Hb_161175_010 Hb_161175_010 Hb_006442_020--Hb_161175_010 Hb_006442_020--Hb_002221_070 Hb_011249_020 Hb_011249_020 Hb_006442_020--Hb_011249_020 Hb_002496_020 Hb_002496_020 Hb_004191_020--Hb_002496_020 Hb_000335_030 Hb_000335_030 Hb_004191_020--Hb_000335_030 Hb_006478_020 Hb_006478_020 Hb_004191_020--Hb_006478_020 Hb_001971_010 Hb_001971_010 Hb_004191_020--Hb_001971_010 Hb_008790_030 Hb_008790_030 Hb_004191_020--Hb_008790_030 Hb_024128_020 Hb_024128_020 Hb_004191_020--Hb_024128_020 Hb_004116_020 Hb_004116_020 Hb_079483_020--Hb_004116_020 Hb_003103_010 Hb_003103_010 Hb_079483_020--Hb_003103_010 Hb_002154_110 Hb_002154_110 Hb_079483_020--Hb_002154_110 Hb_001195_070 Hb_001195_070 Hb_079483_020--Hb_001195_070 Hb_113818_010 Hb_113818_010 Hb_079483_020--Hb_113818_010 Hb_005847_060 Hb_005847_060 Hb_004619_080--Hb_005847_060 Hb_001348_180 Hb_001348_180 Hb_004619_080--Hb_001348_180 Hb_002168_060 Hb_002168_060 Hb_004619_080--Hb_002168_060 Hb_005054_060 Hb_005054_060 Hb_004619_080--Hb_005054_060 Hb_010583_020 Hb_010583_020 Hb_004619_080--Hb_010583_020 Hb_013726_020 Hb_013726_020 Hb_004619_080--Hb_013726_020 Hb_010883_050 Hb_010883_050 Hb_002221_070--Hb_010883_050 Hb_011360_070 Hb_011360_070 Hb_002221_070--Hb_011360_070 Hb_007009_010 Hb_007009_010 Hb_002221_070--Hb_007009_010 Hb_007904_260 Hb_007904_260 Hb_002221_070--Hb_007904_260 Hb_001439_200 Hb_001439_200 Hb_002221_070--Hb_001439_200 Hb_002221_070--Hb_161175_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3052 0.393128 6.40121 20.7993 7.35943 14.1133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5961 20.5187 15.082 3.10119 21.0424

CAGE analysis